Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq925 226 2e-54 seq969 154 1e-32 >seq925 Length=3171676 Score = 226 bits (250), Expect = 2e-54 Identities = 492/725 (68%), Gaps = 16/725 (2%) Strand=Plus/Plus Query 43751 GCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG 43810 ||| | ||||| |||||||| | ||||| || ||||| | || || |||| ||||| Sbjct 2021094 GCAGAAGCGTCTTTTTGGACCGTGGAAGAGGTAGATTTATCCAAGGATTTAGATGATTGG 2021153 Query 43811 ATTGCATTAAAACC--ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCT 43867 ||| | | |||| |||| ||||||| | || || || || |||||||| Sbjct 2021154 ---GCACGACTTACTGACAACGAAAGACATTTTGTTTCGCACGTATTAGCCTTTTTTGCC 2021210 Query 43868 GCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCG-CAAGAAGTTCAATT 43926 || || || || || ||||||||||||| ||| |||| | |||||||||||| | Sbjct 2021211 GCCTCGGATGGTATTGTAAATGAAAATTTGG-TAGAACGTTTCAGTCAAGAAGTTCAAGT 2021269 Query 43927 ACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAAT 43986 | | || || || ||||| || || |||||||| || || |||||| | || || ||||| Sbjct 2021270 AACGGAGGCGCGGTGTTTCTACGGTTTTCAAATCGCTATGGAAAATGTGCACTCAGAAAT 2021329 Query 43987 GTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGA-TTGTTTA 44045 ||| || | | || || || || || || || |||| ||| | | ||||| | Sbjct 2021330 GTATAGCATATTAATTGACACATATATTAAGGA-CGGCAAACAAAGAGACTATTTGTTCA 2021388 Query 44046 ATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA 44105 |||| || || || | ||||| |||| | ||| || || ||||| || ||||| Sbjct 2021389 ATGCAATTGAGACGATGCCTGCTGTTAAGCGTAAGGCTGATTGGGCGCTGGCTTGGATTT 2021448 Query 44106 ATTCAAA---TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTT 44162 |||||| || ||||| ||||| | | || ||||| | ||| |||||||| | Sbjct 2021449 CTTCAAAGTCTGCAAACTTTGGTGAACGTATAATTGCATTTGCCGCTGTTGAAGGCATAT 2021508 Query 44163 TCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGT 44222 ||||| || ||||| | || |||||| | |||||||| ||||| ||||| || | Sbjct 2021509 TCTTTAGCGGCAGTTTTGCATCAATCTTTTGGCTTAAGAAACGTGGTTTAATGCCGGGCT 2021568 Query 44223 TGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCT 44282 | || || || |||||||| || ||||| || || |||||||| ||||| || || | Sbjct 2021569 TAACATTCTCCAATGAGTTGATCTCACGTGACGAGGGTTTACATTGTGATTTCGCGTGTT 2021628 Query 44283 TGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTG 44342 || | | | || | || || || || || | || |||| || || | Sbjct 2021629 TGATGTTCCAACATTT--GATACAGAAACCCAGCAGGGAA-CGTATTATTGAAATCATAT 2021685 Query 44343 TAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAG 44402 || ||||| || || ||||||||||| | ||| |||||||||||||| |||| | Sbjct 2021686 CTGAAGCAGTTAAAATTGAACAAGAATTCTTAACAGACGCATTACCTGTAAACCTAATTG 2021745 Query 44403 GAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGG 44462 | |||||| | | ||| | |||||||||| | | || |||||||| || | | Sbjct 2021746 GTATGAATTGTAGTCTCATGTCGGATTATATTGAATTCGTAGCCGATCGTTTGCTGGTCG 2021805 Query 44463 AACTG 44467 ||||| Sbjct 2021806 AACTG 2021810 >seq969 Length=5813909 Score = 154 bits (170), Expect = 1e-32 Identities = 311/456 (68%), Gaps = 8/456 (2%) Strand=Plus/Minus Query 40860 GATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT 40919 || ||||| ||| | || |||||||| || ||||||| ||| |||||||| || ||||| Sbjct 2585881 GAAGAAGGCGATTTGGGGCCTGTTTACGGTTTTCAGTGGCGTCATTTTGGTGCCAAATAC 2585822 Query 40920 GACACTATGTACTCTGATTATACCAA---TAAAGGAATGGATCAATTACAGTGCGTTATA 40976 ||| |||| || || ||| | |||| || |||||| | || || || Sbjct 2585821 CGTACT-TGTAAG--GAAAATTACAAGGGTGAAGGCATAGATCAACTTCAACAAGTAATT 2585765 Query 40977 GATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACG 41036 || || || ||| | | || || |||| | |||||| ||| || ||||| || Sbjct 2585764 GACACTATCAAAAACAACCCTAATGACCGAAGAATAATAATGTCTGCATGGAATCCCGTT 2585705 Query 41037 GACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAA 41095 || | | ||||| || ||||||||||||| || || || |||| |||| || Sbjct 2585704 GATATCCCAGAAATGGCGTTACCACCTTGTCATT-GTCTTGCGCAATTTTTCGTTGCAAA 2585646 Query 41096 TGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTT 41155 || || ||||| ||||||||||| ||| | | || |||||| | || || ||||| Sbjct 2585645 CGGAGAGCTGTCCTGTCAATTGTACCAACGTAGCGCCGATATGGGATTGGGCGTACCGTT 2585586 Query 41156 TAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACC 41215 ||||| || ||| || | || || || ||||||||||| | || ||| | || Sbjct 2585585 CAACATTGCTTCGTATTCTTTACTTACCTACATGATTGCACATATAACTAATCTTCGTCC 2585526 Query 41216 TGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTT 41275 ||||| || || || || | ||||| | ||||| |||| | || || || ||| | Sbjct 2585525 AGGTGACTTCGTGCATACTCTTGGAGACGCTCATATCTACAAAACGCATATTGAACCGCT 2585466 Query 41276 AACAGAACAACTGACACGAAAACCTAGACCATTTCC 41311 |||||||||| | || || |||||| | || ||||| Sbjct 2585465 AACAGAACAAATAACCCGTAAACCTCGTCCGTTTCC 2585430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447251745030