Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq1762 316 2e-81 seq454 132 4e-26 >seq1762 Length=809008 Score = 316 bits (350), Expect = 2e-81 Identities = 1029/1576 (65%), Gaps = 39/1576 (2%) Strand=Plus/Minus Query 130403 CTGTTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATG 130462 || || || ||||||||||| |||||||| | || ||||| |||||||||||||||||| Sbjct 695483 CTTTTGTCTACGGTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATG 695424 Query 130463 CCTGTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTG--GTAAT 130520 || ||||| | || ||| |||||| || || | | ||||| ||||| Sbjct 695423 CCGGTTTTTAAACCTGCTTTCCAACCATAAAAATGTATA--GAAGTAAGTTTGCCGTAAT 695366 Query 130521 TGGGTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTG 130580 | |||| || ||| ||| || | ||||| ||| || ||||| || || | || | Sbjct 695365 TAGGTTCTGCTACGTGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAG 695306 Query 130581 CAGCCATGTCGA-GCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTA 130639 ||||||| | | | | | ||||| ||||||||| |||| || || || || | Sbjct 695305 CAGCCATTTTTATGGAAGTTTTTACCGAA-ATCTCCCAAACGGTTTTATACAGTTCGCGT 695247 Query 130640 ATGTGTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTG 130699 |||| || |||||| |||| ||| | ||| | | | ||||||| || Sbjct 695246 ATGTTTTGGGGTATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTT 695187 Query 130700 CGCATACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATG 130759 |||| | ||| | || || | | ||| || | |||||||| || | Sbjct 695186 TTCATATCATCATCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACA 695127 Query 130760 ATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAG 130819 | ||||| ||||| | || || || | | ||||| ||| ||| |||| ||||| Sbjct 695126 ACCTGAAACTCACCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAA 695067 Query 130820 GATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGA 130879 ||||| || || || | ||||||||| || | ||||| |||||| ||| | || || | Sbjct 695066 GATTCATTATTACCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAA 695007 Query 130880 GAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAG 130939 || || || | ||| || || | |||||| ||||| ||| ||||| |||||| Sbjct 695006 GAGTTGCGTACACCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCA 694947 Query 130940 GTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGA- 130998 || || || || | |||||||||| | |||| || ||||| || | || || | Sbjct 694946 GTCGGCTTT---TTATCCCACATATCATACTGTAAAATACCTTTGCTAACCGG--TGAAC 694892 Query 130999 -TTCGAACGATTCGTAGATTCC---TTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAG 131054 ||| | | |||||| || || || |||| ||| ||| ||||| |||| Sbjct 694891 CTTCATAAGTTTCGTAAGGCCCAAATTTTTCA---GCCAATTCGCAGCTGGCTTCTAAAG 694835 Query 131055 CTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGT 131114 | || || ||||| ||||| ||||||| ||| ||| | ||||| | ||| |||| Sbjct 694834 CACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGT 694775 Query 131115 AAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTC 131174 ||||| | ||| | || || |||||||| | ||| |||| |||| || | ||| | Sbjct 694774 AAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGAC 694715 Query 131175 TATGTTTTAAATTACATTTACGCGAA-CATTCGGTGGGATAAAGGTTAATGTCAATTATT 131233 ||| | |||||| |||| | || | ||| ||| |||| || ||||| ||| Sbjct 694714 GATGCCTGAAATTAGATTTCTTGGCTTCAGGCAATGG-ATAGTGGTTTATATCAATGATT 694656 Query 131234 TTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTG 131293 || |||||||| ||| || | | ||||| ||| | | || || ||| Sbjct 694655 TTATTTAAATTCCGCGTCACGGTCTTAGTGAC----TTCCTTGAGGCGTTTAAAATCGTA 694600 Query 131294 CCAGTTTCGAGGTTTA-CAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGT 131352 || ||| || |||| ||| | || || || | ||| || || || Sbjct 694599 TTTTTTGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCTAAATTGCATACAGCTAC 694540 Query 131353 TTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCC 131412 |||||| | |||||| ||||||||| | ||| |||||||||| || || ||||| Sbjct 694539 CTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCC 694480 Query 131413 CAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGCGTGC 131471 | ||| |||||||| || || ||| ||| | ||||| || | ||| || || |||| Sbjct 694479 AATATTCTGTTGATTACTCTTTCTATT-ACAAGCATCCTTATATAACATATACGGTGTGC 694421 Query 131472 CCGTTTCGACTTGAGTTTCAATAATGTAT--CGAAAGAGTTTTCGAGCAGACAATTGATA 131529 |||| || || || | ||| |||||| | | |||| ||| | || || || Sbjct 694420 CCGTCTCCACCTGCGATTCTATAATGGAAAACCAAAGGCTTTGGGCTTTAACT-TTCTTA 694362 Query 131530 TTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGA 131589 || | | | || || ||| || ||| ||| ||| |||| || | || || | | Sbjct 694361 TTAGCAC-GTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGAATTCTTCACCCCA--A 694305 Query 131590 ACT--GTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCA 131647 ||| || || |||||| | |||||||||| ||||| | | || |||| Sbjct 694304 ACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAATCCTCATTTGCTTCA 694245 Query 131648 ACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTC 131707 || ||||||||||| || || || | ||| || || || || | |||||||||| | | Sbjct 694244 ACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAATCTCTAGCTCGATGC 694185 Query 131708 TCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGT 131767 || ||| | || || |||| || |||| ||||| || ||||| || || ||||| || Sbjct 694184 TCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATATCAGCGTGCCAAGGC 694125 Query 131768 TCCAAATACACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAACC 131824 ||||| || | || | || ||| || |||||| ||||||| |||| ||| | Sbjct 694124 TCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGATCCACATAACGTGCT 694065 Query 131825 ATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTA 131884 | ||| ||| | || |||||||| || |||| || || | | ||||| |||| | | Sbjct 694064 ACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGCCATTCGTGCCCGCA 694005 Query 131885 ATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTA 131944 || | |||| || || | || ||||| || | |||||||| || | ||||| Sbjct 694004 ATCGAAGTGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATACCACCAGCAGATTTA 693945 Query 131945 GAGATTAGTGCGCATT 131960 || || | ||| |||| Sbjct 693944 GAAATCAATGCACATT 693929 >seq454 Length=983520 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || |||||||| |||||||||||||| | ||||| || ||||| || |||||||| | Sbjct 254677 CCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGAC 254736 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| ||||||| || ||||| ||||| |||| | ||| |||||||| || || Sbjct 254737 AAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGA 254796 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || ||||| ||||||| || | | || | || |||| | ||| || Sbjct 254797 ATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGGTTCGACC 254856 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || | ||| || | |||||| |||| || || || |||||||||||| Sbjct 254857 TCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254904 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || ||||| ||||| |||||||| | ||||| || ||||| || ||||||||| Sbjct 254447 TGCCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGG 254506 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | ||||| ||||| || ||||| | || | ||| |||||||| || | Sbjct 254507 ACAAGGTGCGTCCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAG 254566 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || || || ||||||| |||| | || | || |||| | ||||| Sbjct 254567 GAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAA 254626 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || | ||| || | |||||| |||| || || || |||||||||||| Sbjct 254627 CCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCATA 254676 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC- 27078 ||||||||| | || | |||||||| | ||||| || ||||| || ||||||||| Sbjct 253509 GCCTCCGCGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGA 253568 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| || | ||||| ||||| ||||| ||| |||| | |||||||||||| || | Sbjct 253569 TAATGTA-CGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAG 253627 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||| || || || ||||||| |||| | || | || |||| | ||| | Sbjct 253628 GGATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGA 253687 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| | || || | |||||||||| ||| || || || ||||||||| Sbjct 253688 CTTCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCATA 253737 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||| ||||| ||| |||| | |||||||||||| || || | ||| ||||| Sbjct 255768 TCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGGGGAATACCTTCTTTG 255827 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| |||| | || || | | ||| || || ||||| || Sbjct 255828 TCTTGGATCTTGGCCTTCACATTTTCGATGGTATCAGATGGTTCCACCTCCAGAGTAATG 255887 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| || || || ||||| ||||||||||| Sbjct 255888 GTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 255922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424925046928272