Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq1310 107 1e-18
seq454 102 5e-17
seq145 87.8 1e-12
>seq1310
Length=3030561
Score = 107 bits (118), Expect = 1e-18
Identities = 159/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|||||||||||||| || || || ||||||||| || || ||||| || | || ||
Sbjct 645198 AGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGA 645139
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| | |||||| ||||| || || ||||| ||||| || || || | || ||
Sbjct 645138 CCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCT 645079
Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| ||| ||| | ||| || | || ||||| ||| || |||| ||
Sbjct 645078 TTGTCTTGGAT-TTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGT 645020
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || ||||| || | ||||| |||||||||||||| |||
Sbjct 645019 GATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTTTG 644977
>seq454
Length=983520
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | |||||| | |||||||||||| || |||||||| ||||| || || |
Sbjct 253508 CGCCTCCGCGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGG 253567
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| | ||| || | ||||| || || ||||| || || || ||||||||||| || || |
Sbjct 253568 ATAATGTACGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAG 253627
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | || ||||||||| |||| || | || || | || || ||| ||
Sbjct 253628 GGATACCTTCCTTGTCTTGGATC-TTGGCCTTCACATTCTCGATGGTATCTGATGGTTCG 253686
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||||| ||| || || || || || || || || || ||||| |||||
Sbjct 253687 ACTTCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736
Score = 89.7 bits (98), Expect = 3e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550
|||||| |||||||||||||| |||||||| ||||| || || || | || || |
Sbjct 254460 ACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCC 254519
Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610
||||| || || || |||||||| || ||||| ||||| || || || | || |||||
Sbjct 254520 ATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTT 254579
Query 34611 GTCTGTGATCTT 34622
||| ||||||
Sbjct 254580 GTCCTGGATCTT 254591
>seq145
Length=1338480
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||||||||||| ||| || || | || ||||||||| || ||||| || |
Sbjct 898811 CCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCT 898870
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| || || | ||||| |||||||| || || || |||||||| ||||| || || ||
Sbjct 898871 AAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGA 898930
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT--AAAATTGTGTCTTCGCTCTCCA 34657
| || || || ||| ||| ||||| ||||| || || || || | || |
Sbjct 898931 ATACCTTCTTTATCT-TGAATTTTTGCCTTAAC-ATGCTCGATAGTATCCGAGGGTTCGA 898988
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | || || || ||||| || | |||||||| ||||| |||||
Sbjct 898989 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314722672604798
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |