Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq1310 190 2e-43
seq454 154 1e-32
seq145 145 7e-30
seq1509 122 8e-23
>seq1310
Length=3030561
Score = 190 bits (210), Expect = 2e-43
Identities = 180/230 (78%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| ||||| || ||| | || ||| | || || || || ||
Sbjct 644981 ATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCATCT 645040
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | || || | |||||| ||||| |||||||||||||| || ||||| ||||||
Sbjct 645041 GACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 645100
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||||| || | ||||||||||||||||||||| || || | |||||||||||
Sbjct 645101 CAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATTACAAT 645160
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| ||| | || ||||| |||||| |||| ||||| ||
Sbjct 645161 ATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGGTAT 645210
>seq454
Length=983520
Score = 154 bits (170), Expect = 1e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || |||||||||| | || ||| | || || ||||| ||
Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || |||| ||||| || || ||||| || ||||| || || || ||||||
Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 254784
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||||| || | |||||||||||| |||||||| | || | || || ||||||
Sbjct 254783 CAACGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAAC 254724
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| ||||||||||| ||| | |||||||| ||||||||||| ||||| ||
Sbjct 254723 ATCCAAAAGGAGTCTACCCTTCATTTGGTATTGCGTTTGCGCGGTGGTAT 254674
Score = 136 bits (150), Expect = 3e-27
Identities = 168/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || |||||||||| | || ||| | || || ||||| ||
Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || |||| || || || || || ||||| ||||| || || || ||||||
Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 254556
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|| ||||| || | |||||||| || | ||||| | ||| | ||||| ||||||
Sbjct 254555 CAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAAC 254496
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|| |||||||| || || | |||||||| ||||||||||| ||||||||
Sbjct 254495 ATCCAAAAGGAATCTACTCTCCATTTGGTCTTGCGTTTGCGTGGTGGCAT 254446
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || ||| |||| |||||| | || || | ||||| ||||| ||
Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || |||| || || || || |||||||| ||||| || || || ||||||
Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | ||| || || || ||||||| | || | ||||| ||||||
Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACAAC 253557
Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215
|| |||||||| || ||| | |||||||| | ||| | || || |||
Sbjct 253556 ATCCAAAAGGAATCTACCCTCCATTTGGTGCTACGTCTTCGCGGAGGC 253509
Score = 113 bits (124), Expect = 4e-20
Identities = 134/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
||||| || || || || || || || |||||| | |||||||| || |||||||| ||
Sbjct 255922 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCATCT 255863
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | || || | || || || || |||||||||||||| || || || ||||||
Sbjct 255862 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 255803
Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167
|||||||| || | ||| || || || |||||||| | || | ||||||||||||
Sbjct 255802 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCCGATTACAAC 255743
Query 27168 AT 27169
||
Sbjct 255742 AT 255741
Score = 86.0 bits (94), Expect = 5e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182
|||||||||||| |||||||| | || | || || |||||||| |||||||||||
Sbjct 253829 GCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAAAAGGAGTCT 253770
Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| | |||||||| |||||||||| ||||| ||
Sbjct 253769 ACCCTTCATTTGGTCCTGCGTTTGCGTGGTGGTAT 253735
Score = 86.0 bits (94), Expect = 5e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182
|||||||||||| |||||||| | || | || || |||||||| |||||||||||
Sbjct 254996 GCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAAAAGGAGTCT 254937
Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| | |||||||| |||||||||| ||||| ||
Sbjct 254936 ACCCTTCATTTGGTCCTGCGTTTGCGCGGTGGTAT 254902
>seq145
Length=1338480
Score = 145 bits (160), Expect = 7e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044
|| ||||| || || || ||||| || || || ||| | || |||||||| || |||||
Sbjct 899040 GCAATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCC 898981
Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104
|| || | || ||| || || |||||||||||| |||||||| || || ||||||
Sbjct 898980 TCGGATACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGAT 898921
Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164
||||| |||||||| | ||| || |||||| ||||||| || || | | || ||
Sbjct 898920 CAACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTAT 898861
Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214
|| || ||||||||||| |||||||| || || ||||| | | |||||
Sbjct 898860 AATATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCGTCTTAGAGGTGG 898811
>seq1509
Length=4395057
Score = 122 bits (134), Expect = 8e-23
Identities = 115/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 135506 GAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCT 135565
||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct 621981 GAAGGCAAAATGCACGGATTTCTGCGAATGTATTGGGCAAAAAAAATATTGGAATGGTCA 622040
Query 135566 GCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGAT 135625
| || || | | ||| || || ||| || ||| |||||| | |||||| | ||
Sbjct 622041 TCTTCACCAGAGGTGGCCTTAAAAACCGCTATTCATTTGAATGATAAATACAGTCTTGAC 622100
Query 135626 GGACGCGATTCAAATGGCTACGTAGGT 135652
| || ||| |||||||||| || |||
Sbjct 622101 GCTCGAGATCCAAATGGCTATGTTGGT 622127
Score = 114 bits (126), Expect = 1e-20
Identities = 119/155 (77%), Gaps = 1/155 (1%)
Strand=Plus/Plus
Query 135503 CGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGG 135562
|| |||||||||||||| |||||| |||| ||||||||||| ||||| ||| | ||||||
Sbjct 619151 CGTGAAGGCAAAATGCATGGATTTCTGCGAATGTATTGGGCCAAAAAAATACTCGAATGG 619210
Query 135563 TCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTA 135622
||| | |||| | |||||| || || || || |||| || ||| | || |||||
Sbjct 619211 TCTTCTACGCCAGAAGAGGCACTGGAAGTAGCTATTCTTTTAAACGATAAGTATAGTTTG 619270
Query 135623 GATGGACGCGATTCAAATGGCTACGTAGGT-TGTA 135656
|| || || ||| ||||||| || || ||| ||||
Sbjct 619271 GACGGTCGAGATCCAAATGGATATGTTGGTATGTA 619305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434908581717120
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