Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1310 190 2e-43 seq454 154 1e-32 seq145 145 7e-30 seq1509 122 8e-23 >seq1310 Length=3030561 Score = 190 bits (210), Expect = 2e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| ||||| || ||| | || ||| | || || || || || Sbjct 644981 ATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCATCT 645040 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| ||||| |||||||||||||| || ||||| |||||| Sbjct 645041 GACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAA 645100 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||||||||||||||||||||| || || | ||||||||||| Sbjct 645101 CAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATTACAAT 645160 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | || ||||| |||||| |||| ||||| || Sbjct 645161 ATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGGTAT 645210 >seq454 Length=983520 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||||| | || ||| | || || ||||| || Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| ||||| || || ||||| || ||||| || || || |||||| Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAA 254784 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||||||||| |||||||| | || | || || |||||| Sbjct 254783 CAACGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAAC 254724 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||| | |||||||| ||||||||||| ||||| || Sbjct 254723 ATCCAAAAGGAGTCTACCCTTCATTTGGTATTGCGTTTGCGCGGTGGTAT 254674 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||||| | || ||| | || || ||||| || Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || || || ||||| ||||| || || || |||||| Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAA 254556 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | |||||||| || | ||||| | ||| | ||||| |||||| Sbjct 254555 CAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAAC 254496 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || | |||||||| ||||||||||| |||||||| Sbjct 254495 ATCCAAAAGGAATCTACTCTCCATTTGGTCTTGCGTTTGCGTGGTGGCAT 254446 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| |||| |||||| | || || | ||||| ||||| || Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || |||| || || || || |||||||| ||||| || || || |||||| Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAA 253617 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || || || ||||||| | || | ||||| |||||| Sbjct 253616 CAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACAAC 253557 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || |||||||| || ||| | |||||||| | ||| | || || ||| Sbjct 253556 ATCCAAAAGGAATCTACCCTCCATTTGGTGCTACGTCTTCGCGGAGGC 253509 Score = 113 bits (124), Expect = 4e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || |||||| | |||||||| || |||||||| || Sbjct 255922 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCATCT 255863 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || |||||||||||||| || || || |||||| Sbjct 255862 GATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAA 255803 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || || || |||||||| | || | |||||||||||| Sbjct 255802 CAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCCGATTACAAC 255743 Query 27168 AT 27169 || Sbjct 255742 AT 255741 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 |||||||||||| |||||||| | || | || || |||||||| ||||||||||| Sbjct 253829 GCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAAAAGGAGTCT 253770 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | |||||||| |||||||||| ||||| || Sbjct 253769 ACCCTTCATTTGGTCCTGCGTTTGCGTGGTGGTAT 253735 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 |||||||||||| |||||||| | || | || || |||||||| ||||||||||| Sbjct 254996 GCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAAAAGGAGTCT 254937 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | |||||||| |||||||||| ||||| || Sbjct 254936 ACCCTTCATTTGGTCCTGCGTTTGCGCGGTGGTAT 254902 >seq145 Length=1338480 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 || ||||| || || || ||||| || || || ||| | || |||||||| || ||||| Sbjct 899040 GCAATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCC 898981 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || || | || ||| || || |||||||||||| |||||||| || || |||||| Sbjct 898980 TCGGATACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGAT 898921 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| |||||||| | ||| || |||||| ||||||| || || | | || || Sbjct 898920 CAACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTAT 898861 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||||||||| |||||||| || || ||||| | | ||||| Sbjct 898860 AATATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCGTCTTAGAGGTGG 898811 >seq1509 Length=4395057 Score = 122 bits (134), Expect = 8e-23 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 135506 GAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCT 135565 ||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||| Sbjct 621981 GAAGGCAAAATGCACGGATTTCTGCGAATGTATTGGGCAAAAAAAATATTGGAATGGTCA 622040 Query 135566 GCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGAT 135625 | || || | | ||| || || ||| || ||| |||||| | |||||| | || Sbjct 622041 TCTTCACCAGAGGTGGCCTTAAAAACCGCTATTCATTTGAATGATAAATACAGTCTTGAC 622100 Query 135626 GGACGCGATTCAAATGGCTACGTAGGT 135652 | || ||| |||||||||| || ||| Sbjct 622101 GCTCGAGATCCAAATGGCTATGTTGGT 622127 Score = 114 bits (126), Expect = 1e-20 Identities = 119/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 135503 CGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGG 135562 || |||||||||||||| |||||| |||| ||||||||||| ||||| ||| | |||||| Sbjct 619151 CGTGAAGGCAAAATGCATGGATTTCTGCGAATGTATTGGGCCAAAAAAATACTCGAATGG 619210 Query 135563 TCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTA 135622 ||| | |||| | |||||| || || || || |||| || ||| | || ||||| Sbjct 619211 TCTTCTACGCCAGAAGAGGCACTGGAAGTAGCTATTCTTTTAAACGATAAGTATAGTTTG 619270 Query 135623 GATGGACGCGATTCAAATGGCTACGTAGGT-TGTA 135656 || || || ||| ||||||| || || ||| |||| Sbjct 619271 GACGGTCGAGATCCAAATGGATATGTTGGTATGTA 619305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434908581717120