Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq969 98.7 9e-16
>seq969
Length=5813909
Score = 98.7 bits (108), Expect = 9e-16
Identities = 286/435 (66%), Gaps = 4/435 (1%)
Strand=Plus/Plus
Query 6562 GTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACG-ACAT 6620
||||||||| || || || | |||||||| | || || ||| | || | | ||
Sbjct 2585486 GTAGATATGAGCGTCTCCAAGAGTATGCACGAAGTCACCTGGA-CGAAGATTAGTTATAT 2585544
Query 6621 GAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCA 6680
| || |||||||| || || | || || ||||||||||||||| || || || ||||
Sbjct 2585545 GTGCAATCATGTAGGTAAGTAAAGAATACGAAGCAATGTTGAACGGTACGCCCAATCCCA 2585604
Query 6681 TGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG-G 6739
| || | ||||| || | || ||||||||||| || || || ||| | ||||| |
Sbjct 2585605 TATCGGCGCTACGTTGGTACAATTGACAGGACAGCTCTCCGTTTGCAACGAAAAATTGCG 2585664
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCAC 6799
|| || || || || || | |||||| |||| ||| || ||||| || ||
Sbjct 2585665 CA-AGACAATGACAAGGTGGTAACGCCATTTCTGGGATATCAACGGGATTCCATGCAGAC 2585723
Query 6800 ATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGG 6859
|| | || |||| ||||| |||||| || | ||||| || || | || || ||
Sbjct 2585724 ATTATTATTCTTCGGTCATTAGGGTTGTTTTTGATAGTGTCAATTACTTGTTGAAGTTGA 2585783
Query 6860 TCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTC 6919
|| || | ||| || | | | | || || | || ||||| || | |
Sbjct 2585784 TCTATGCCTTCACCCTTGTAATTTTCCTTACAAGTACGGTATTTGGCACCAAAATGACGC 2585843
Query 6920 CACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTG 6979
||||| || ||||| || || ||||| ||||| || || ||| | ||| || | |||
Sbjct 2585844 CACTGAAAACCGTAAACAGGCCCCAAATCGCCTTCTTCACGACTGGTGAAACCACATTTG 2585903
Query 6980 TCCAGAAAGTCTCGA 6994
|| || || ||||||
Sbjct 2585904 TCAAGGAACTCTCGA 2585918
Score = 98.7 bits (108), Expect = 9e-16
Identities = 286/435 (66%), Gaps = 4/435 (1%)
Strand=Plus/Minus
Query 34351 TCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGT 34410
|||||| || || ||||| | || ||| | ||| || || ||||| ||||| || ||
Sbjct 2585918 TCGAGAGTTCCTTGACAAATGTGGTTTCACCAGTCGTGAAGAAGGCGATTTGGGGCCTGT 2585859
Query 34411 CTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTC 34470
||||| || |||||| | || ||||| || | || || | | | | ||
Sbjct 2585858 TTACGGTTTTCAGTGGCGTCATTTTGGTGCCAAATACCGTACTTGTAAGGAAAATTACAA 2585799
Query 34471 GGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGA 34530
||| | || || || || || | || || ||||| | || |||||| ||||
Sbjct 2585798 GGGTGAAGGCATAGATCAACTTCAACAAGTAATTGACACTATCAAAAACAACCCTAATGA 2585739
Query 34531 CAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCC 34590
| |||| || | |||| || ||||| || ||| |||| |||||| | || ||
Sbjct 2585738 CCGAAGAATAATAATGTCTGCATGGAATCCCGTTGATATCCCAGAAATGGCGTTACCACC 2585679
Query 34591 GTGCCACACCCTCTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATC 34649
|| || || ||| ||||| | ||| || || || ||||||||||| || | || |
Sbjct 2585678 TTGTCATTGTCT-TGCGCAATTTTTCGTTGCAAACGGAGAGCTGTCCTGTCAATTGTACC 2585620
Query 34650 AACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCA 34709
|||| | || ||||| || || || ||||||||||||||| || || | || |
Sbjct 2585619 AACGTAGCGCCGATATGGGATTGGGCGTACCGTTCAACATTGCTTCGTATTCTTTACTTA 2585560
Query 34710 CGTACATGATCGCTCATGT-CGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGG 34768
| |||||||| || ||| | | || | ||| || || | |||||||| | ||
Sbjct 2585559 CCTACATGATTGCACATATAACTAATCTTCG-TCCAGGTGACTTCGTGCATACTCTTGGA 2585501
Query 34769 GATGCGCATATCTAC 34783
|| || |||||||||
Sbjct 2585500 GACGCTCATATCTAC 2585486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448252280476320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |