Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq969 98.7 9e-16 >seq969 Length=5813909 Score = 98.7 bits (108), Expect = 9e-16 Identities = 286/435 (66%), Gaps = 4/435 (1%) Strand=Plus/Plus Query 6562 GTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACG-ACAT 6620 ||||||||| || || || | |||||||| | || || ||| | || | | || Sbjct 2585486 GTAGATATGAGCGTCTCCAAGAGTATGCACGAAGTCACCTGGA-CGAAGATTAGTTATAT 2585544 Query 6621 GAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCA 6680 | || |||||||| || || | || || ||||||||||||||| || || || |||| Sbjct 2585545 GTGCAATCATGTAGGTAAGTAAAGAATACGAAGCAATGTTGAACGGTACGCCCAATCCCA 2585604 Query 6681 TGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTG-G 6739 | || | ||||| || | || ||||||||||| || || || ||| | ||||| | Sbjct 2585605 TATCGGCGCTACGTTGGTACAATTGACAGGACAGCTCTCCGTTTGCAACGAAAAATTGCG 2585664 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCAC 6799 || || || || || || | |||||| |||| ||| || ||||| || || Sbjct 2585665 CA-AGACAATGACAAGGTGGTAACGCCATTTCTGGGATATCAACGGGATTCCATGCAGAC 2585723 Query 6800 ATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGG 6859 || | || |||| ||||| |||||| || | ||||| || || | || || || Sbjct 2585724 ATTATTATTCTTCGGTCATTAGGGTTGTTTTTGATAGTGTCAATTACTTGTTGAAGTTGA 2585783 Query 6860 TCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTC 6919 || || | ||| || | | | | || || | || ||||| || | | Sbjct 2585784 TCTATGCCTTCACCCTTGTAATTTTCCTTACAAGTACGGTATTTGGCACCAAAATGACGC 2585843 Query 6920 CACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTG 6979 ||||| || ||||| || || ||||| ||||| || || ||| | ||| || | ||| Sbjct 2585844 CACTGAAAACCGTAAACAGGCCCCAAATCGCCTTCTTCACGACTGGTGAAACCACATTTG 2585903 Query 6980 TCCAGAAAGTCTCGA 6994 || || || |||||| Sbjct 2585904 TCAAGGAACTCTCGA 2585918 Score = 98.7 bits (108), Expect = 9e-16 Identities = 286/435 (66%), Gaps = 4/435 (1%) Strand=Plus/Minus Query 34351 TCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGT 34410 |||||| || || ||||| | || ||| | ||| || || ||||| ||||| || || Sbjct 2585918 TCGAGAGTTCCTTGACAAATGTGGTTTCACCAGTCGTGAAGAAGGCGATTTGGGGCCTGT 2585859 Query 34411 CTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTC 34470 ||||| || |||||| | || ||||| || | || || | | | | || Sbjct 2585858 TTACGGTTTTCAGTGGCGTCATTTTGGTGCCAAATACCGTACTTGTAAGGAAAATTACAA 2585799 Query 34471 GGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGA 34530 ||| | || || || || || | || || ||||| | || |||||| |||| Sbjct 2585798 GGGTGAAGGCATAGATCAACTTCAACAAGTAATTGACACTATCAAAAACAACCCTAATGA 2585739 Query 34531 CAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCC 34590 | |||| || | |||| || ||||| || ||| |||| |||||| | || || Sbjct 2585738 CCGAAGAATAATAATGTCTGCATGGAATCCCGTTGATATCCCAGAAATGGCGTTACCACC 2585679 Query 34591 GTGCCACACCCTCTGC-CAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATC 34649 || || || ||| ||||| | ||| || || || ||||||||||| || | || | Sbjct 2585678 TTGTCATTGTCT-TGCGCAATTTTTCGTTGCAAACGGAGAGCTGTCCTGTCAATTGTACC 2585620 Query 34650 AACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCA 34709 |||| | || ||||| || || || ||||||||||||||| || || | || | Sbjct 2585619 AACGTAGCGCCGATATGGGATTGGGCGTACCGTTCAACATTGCTTCGTATTCTTTACTTA 2585560 Query 34710 CGTACATGATCGCTCATGT-CGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGG 34768 | |||||||| || ||| | | || | ||| || || | |||||||| | || Sbjct 2585559 CCTACATGATTGCACATATAACTAATCTTCG-TCCAGGTGACTTCGTGCATACTCTTGGA 2585501 Query 34769 GATGCGCATATCTAC 34783 || || ||||||||| Sbjct 2585500 GACGCTCATATCTAC 2585486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252280476320