Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq969 84.2 2e-11 >seq969 Length=5813909 Score = 84.2 bits (92), Expect = 2e-11 Identities = 193/291 (66%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 118374 AAAATCTTCAAACTTAAAGTCTTCTATATTTTTGATATCCTTGTTTATGGATAGTGTGGG 118433 ||| || ||||| ||||||| || ||| ||||| || ||||| | | | || Sbjct 2585372 AAAGTCATCAAAAGTAAAGTCCTCGATAGATTTGAGTTCACGCTTTATAATCAATTTAGG 2585431 Query 118434 AAACGGGAGAGGCTCCCTTGTGAGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGAC 118493 |||||| |||| | | || | ||| | | || || ||||| || | | |||| Sbjct 2585432 AAACGGACGAGGTTTACGGGTTATTTGTTCTGTTAGCGGTTCAATATGCGTTTTGTAGAT 2585491 Query 118494 ATGAGCATCCCCAATTGTATGTATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAAT 118553 |||||| || |||| ||||| | ||| ||||| || ||| || | || ||||| Sbjct 2585492 ATGAGCGTCTCCAAGAGTATGCACGAAGTCACCTGGACGAAGATTAGTTATATGTGCAAT 2585551 Query 118554 CATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGC 118613 |||||| || | ||| || || | || || || || |||| ||||| || || Sbjct 2585552 CATGTAGGTAAGTAAAGAATACGAAGCAATGTTGAACGGTACGCCCAATCCCATATCGGC 2585611 Query 118614 TGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATAAAACTG 118664 | ||||||||||| || || ||||| ||||||||||| |||| || Sbjct 2585612 GCTACGTTGGTACAATTGACAGGACAGCTCTCCGTTTGCAACGAAAAATTG 2585662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414467677106584