Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1310 116 3e-21 seq454 111 1e-19 >seq1310 Length=3030561 Score = 116 bits (128), Expect = 3e-21 Identities = 166/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| |||||||| ||||| || ||||| || || || | || ||||| Sbjct 644978 AAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCA 645037 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| || | ||| |||||| ||||| |||||||||||| | || | Sbjct 645038 TCTGACACCATCGAAAAT--GTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAG 645095 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || || || ||||| ||||||||||| || | |||| |||||||||| Sbjct 645096 ATCAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATT 645155 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| ||| || | || ||||| |||||| ||||||| || Sbjct 645156 ACAATATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGG 645207 >seq454 Length=983520 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| |||| || || ||||| || ||||||||||| |||||| |||| Sbjct 254810 GATAAGGAAGGTATTCCCCCAGATCAACAACGTTTGATTTTTGCCGGCAAACAACTGGAA 254751 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||||| ||||| || |||||||||||||| ||| || | |||||||| ||| Sbjct 254750 GACGGACGCACTTTGTCTGACTACAACATCCAAAAGGAGTCTACCCTTCATTTGGTATTG 254691 Query 28003 CGTTTGCGTGGCGG 28016 |||||||| || || Sbjct 254690 CGTTTGCGCGGTGG 254677 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| || || ||||| || || |||||||| || || | || Sbjct 254582 GACAAGGAAGGTATTCCTCCAGATCAACAACGTTTGATCTTTGCCGGCAAGCAGCTAGAA 254523 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| ||||||||| |||||||||||||| || ||| | |||||||| ||| Sbjct 254522 GATGGACGCACCTTGTCCGACTACAACATCCAAAAGGAATCTACTCTCCATTTGGTCTTG 254463 Query 28003 CGTTTGCGTGGCGGC 28017 ||||||||||| ||| Sbjct 254462 CGTTTGCGTGGTGGC 254448 Score = 93.3 bits (102), Expect = 3e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 27916 TTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAA 27975 || || |||||||| |||||| |||| |||| ||||| ||||| || |||||||||||| Sbjct 253838 TTGATCTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAA 253779 Query 27976 AAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||| || | |||||||| ||||||||||||| || Sbjct 253778 AAGGAGTCTACCCTTCATTTGGTCCTGCGTTTGCGTGGTGG 253738 Score = 87.8 bits (96), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 27916 TTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAA 27975 || || |||||||| |||||| |||| |||| ||||| ||||| || |||||||||||| Sbjct 255005 TTGATCTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAA 254946 Query 27976 AAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||| || | |||||||| |||||||||| || || Sbjct 254945 AAGGAGTCTACCCTTCATTTGGTCCTGCGTTTGCGCGGTGG 254905 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| |||| || || ||||| || || |||||||| || || ||||| Sbjct 254354 GACAAGGAAGGTATTCCCCCAGATCAACAACGTTTGATCTTTGCCGGCAAGCAGTTGGAA 254295 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGA 27980 || | ||||| ||||| || ||||||||||||||||| Sbjct 254294 GATGGACGCACTTTGTCTGACTACAACATCCAAAAAGA 254257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355854567246162