Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq1310 116 3e-21
seq454 111 1e-19
>seq1310
Length=3030561
Score = 116 bits (128), Expect = 3e-21
Identities = 166/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|||||||| |||||||| ||||| || ||||| || || || | || |||||
Sbjct 644978 AAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCA 645037
Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
| ||| || | ||| |||||| ||||| |||||||||||| | || |
Sbjct 645038 TCTGACACCATCGAAAAT--GTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAG 645095
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||||| || || || ||||| ||||||||||| || | |||| ||||||||||
Sbjct 645096 ATCAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATT 645155
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|||| |||||||| ||| || | || ||||| |||||| ||||||| ||
Sbjct 645156 ACAATATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGG 645207
>seq454
Length=983520
Score = 111 bits (122), Expect = 1e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|| || |||||| |||| || || ||||| || ||||||||||| |||||| ||||
Sbjct 254810 GATAAGGAAGGTATTCCCCCAGATCAACAACGTTTGATTTTTGCCGGCAAACAACTGGAA 254751
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|||| ||||| ||||| || |||||||||||||| ||| || | |||||||| |||
Sbjct 254750 GACGGACGCACTTTGTCTGACTACAACATCCAAAAGGAGTCTACCCTTCATTTGGTATTG 254691
Query 28003 CGTTTGCGTGGCGG 28016
|||||||| || ||
Sbjct 254690 CGTTTGCGCGGTGG 254677
Score = 109 bits (120), Expect = 4e-19
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| |||||| |||| || || ||||| || || |||||||| || || | ||
Sbjct 254582 GACAAGGAAGGTATTCCTCCAGATCAACAACGTTTGATCTTTGCCGGCAAGCAGCTAGAA 254523
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | ||||| ||||||||| |||||||||||||| || ||| | |||||||| |||
Sbjct 254522 GATGGACGCACCTTGTCCGACTACAACATCCAAAAGGAATCTACTCTCCATTTGGTCTTG 254463
Query 28003 CGTTTGCGTGGCGGC 28017
||||||||||| |||
Sbjct 254462 CGTTTGCGTGGTGGC 254448
Score = 93.3 bits (102), Expect = 3e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 27916 TTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAA 27975
|| || |||||||| |||||| |||| |||| ||||| ||||| || ||||||||||||
Sbjct 253838 TTGATCTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAA 253779
Query 27976 AAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| ||| || | |||||||| ||||||||||||| ||
Sbjct 253778 AAGGAGTCTACCCTTCATTTGGTCCTGCGTTTGCGTGGTGG 253738
Score = 87.8 bits (96), Expect = 1e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 27916 TTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAA 27975
|| || |||||||| |||||| |||| |||| ||||| ||||| || ||||||||||||
Sbjct 255005 TTGATCTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAA 254946
Query 27976 AAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| ||| || | |||||||| |||||||||| || ||
Sbjct 254945 AAGGAGTCTACCCTTCATTTGGTCCTGCGTTTGCGCGGTGG 254905
Score = 82.4 bits (90), Expect = 5e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
||||| |||||| |||| || || ||||| || || |||||||| || || |||||
Sbjct 254354 GACAAGGAAGGTATTCCCCCAGATCAACAACGTTTGATCTTTGCCGGCAAGCAGTTGGAA 254295
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGA 27980
|| | ||||| ||||| || |||||||||||||||||
Sbjct 254294 GATGGACGCACTTTGTCTGACTACAACATCCAAAAAGA 254257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355854567246162
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |