Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq454 154 3e-32 seq1310 149 1e-30 seq145 123 6e-23 >seq454 Length=983520 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| || || ||||||||||| || || | | ||| | ||||||||| |||||| Sbjct 254473 TGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCTAGCTGC 254532 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| | |||||||| || ||||||| |||||||||||||||||||| Sbjct 254533 TTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTG 254592 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||| || |||||||| || || ||||||||| | |||||| || || || || Sbjct 254593 GCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTGATGGTTTTGCCGGTC 254652 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | ||||| Sbjct 254653 AAGGTCTTAACGAAGATTTGCAT 254675 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | ||| || | || || || || || ||||||||||| || || | | || Sbjct 253516 CGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTA 253575 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||||||||||| || ||||| || | || ||||| || ||||| | ||| Sbjct 253576 CGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCT 253635 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 |||||||| |||||||| ||||| || |||||||| || || ||| || || | Sbjct 253636 TCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAG 253695 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| | |||||| || || | ||||| Sbjct 253696 GTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736 Score = 129 bits (142), Expect = 1e-24 Identities = 139/184 (76%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 210933 ATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGT 210992 ||||| ||||| | | || | ||||||||||| |||||| || ||||| || | || Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800 Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 ||||| || || |||| ||||| ||||| |||||||| ||||| ||||||||||| Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 ||||| ||| ||||| ||||| || ||||| || || || ||||| || || | ||| Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920 Query 211113 ATTT 211116 |||| Sbjct 255921 ATTT 255924 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 210921 GACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCG 210980 || |||||||||||||| || || | | || | ||||||||||| ||||||||| || Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313 Query 210981 AAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACG 211040 ||||| | |||||||| || || |||| ||||||||||| ||||| || ||||| Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373 Query 211041 TTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTT 211100 || || ||||| ||||| ||||| || | ||||| || || || || | ||| || Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433 Query 211101 ACAAACACCTGCAT 211114 || || | ||||| Sbjct 254434 ACGAAAATTTGCAT 254447 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || ||||| ||||||||||| || || | | || | ||| |||||||| || Sbjct 254701 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCCAGTTGT 254760 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || | |||||||| || || |||| |||||||| || |||||||| Sbjct 254761 TTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTG 254820 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || |||||||| || || ||| ||||| | |||||| || || || || Sbjct 254821 GCCTTGACATTCTCGATGGTATCTGATGGTTCGACCTCCAAAGTGATGGTTTTGCCGGTC 254880 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 | ||||| || || | ||||| Sbjct 254881 AAGGTCTTAACGAAGATTTGCAT 254903 >seq1310 Length=3030561 Score = 149 bits (164), Expect = 1e-30 Identities = 157/207 (76%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 |||||| || ||||| |||||||| || ||||| | | || | |||||||||| || Sbjct 645184 GTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATCTTCCAATTG 645125 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||| |||||||| | |||||||| || || || | ||||| ||||| ||||| || Sbjct 645124 TTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGATTTT 645065 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||| || ||||||||||||||||| || ||||| | |||||| ||||| || || Sbjct 645064 GGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTCTTACCAGT 645005 Query 211091 GAGAGTCTTTACAAACACCTGCATTTT 211117 || || || ||||| | ||||||||| Sbjct 645004 CAGTGTTTTGACAAAAATCTGCATTTT 644978 >seq145 Length=1338480 Score = 123 bits (136), Expect = 6e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| |||||||| ||||| || || | || | ||||||||||| || || || Sbjct 898841 GTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATCTTCCAGTTGTTTTCCC 898900 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | |||||||| || || |||| ||||| || || || || ||| || Sbjct 898901 GCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTATCTTGAATTTTTGCCTTA 898960 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || | ||||| || || ||| ||| ||||| |||||||| ||||| |||||||| || Sbjct 898961 ACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 899020 Query 211098 TTTACAAACACCTGCATT 211115 || || || | |||||| Sbjct 899021 TTCACGAAAATTTGCATT 899038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159125177947190