Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq145 161 7e-35
seq1310 141 6e-29
seq454 134 9e-27
>seq145
Length=1338480
Score = 161 bits (178), Expect = 7e-35
Identities = 164/211 (78%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| |||||||| |||||||||||||| || || |||||||| || || || || |
Sbjct 899038 AATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTC 898979
Query 23670 GGACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
||| ||| | || || |||| |||||| || || ||||||||| | || || ||||
Sbjct 898978 GGATACTATCGAGCATGTTAAGGCAAAAA-TTCAAGATAAAGAAGGTATTCCCCCCGATC 898920
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||| |||||||| || || || |||||||||||||| | || ||||||| || || |
Sbjct 898919 AACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTATA 898860
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819
| || ||||| ||||| || ||||| |||||
Sbjct 898859 ATATCCAAAAGGAGTCTACCTTACACTTAGT 898829
>seq1310
Length=3030561
Score = 141 bits (156), Expect = 6e-29
Identities = 173/235 (74%), Gaps = 1/235 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|||||||||||||| || ||||| || || || || || |||||| | || || || |
Sbjct 644978 AAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCA 645037
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | |||| | ||| ||||| |||||||||||| | || ||||||
Sbjct 645038 TCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGAT 645097
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
||||| ||||| || || |||||||||||| ||||||| | |||||||| |||||||
Sbjct 645098 CAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATTAC 645157
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841
|| || ||||| ||||| || | || || || || | |||| || || ||||
Sbjct 645158 AATATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGGTATCA 645212
>seq454
Length=983520
Score = 134 bits (148), Expect = 9e-27
Identities = 168/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || |||||||| ||| | || || ||||| |||||| | || || || | |
Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || | | || || |||||| | || ||||||||
Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGA-TCCAAGATAAGGAAGGTATTCCCCCAGATCA 254785
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||||| || ||||||||||||||||||||||||| ||||||||| || |||||
Sbjct 254784 ACAACGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAA 254725
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| ||||| ||||| || | ||||| || || | ||||| || ||
Sbjct 254724 CATCCAAAAGGAGTCTACCCTTCATTTGGTATTGCGTTTGCGCGGTGG 254677
Score = 129 bits (142), Expect = 4e-25
Identities = 147/195 (75%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| |||||||||||||| | || || ||||| ||||| | |||||||| | |
Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCT 254388
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||| ||| | || | |||| | ||||| |||||| | || ||||||||
Sbjct 254387 GATACCATTGAGAATGTGAAGGCTAAAA-TCCAAGACAAGGAAGGTATTCCCCCAGATCA 254329
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||||| || ||||||||||| || ||||||| | ||||||||| || |||||
Sbjct 254328 ACAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAA 254269
Query 23790 CATACAAAAAGAGTC 23804
||| |||||||| ||
Sbjct 254268 CATCCAAAAAGAATC 254254
Score = 120 bits (132), Expect = 2e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || |||||||| ||| | || || ||||| |||||| | || ||||| | |
Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || | | ||||| |||||| | || ||||||||
Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGTATTCCTCCAGATCA 254557
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||||| || ||||||||||| || || ||||| | |||||| || ||| |||||
Sbjct 254556 ACAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAA 254497
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| ||||| || || || | ||||| || || | ||||| || ||
Sbjct 254496 CATCCAAAAGGAATCTACTCTCCATTTGGTCTTGCGTTTGCGTGGTGG 254449
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||||||||| || | ||||| || || ||||| | ||||| || | |
Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | || | | ||||| |||||| | || ||||||||
Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGA-TCCAAGACAAGGAAGGTATCCCTCCAGATCA 253618
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||||||| || || || || || || |||||||| | ||| || ||| ||| |||||
Sbjct 253617 ACAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACAA 253558
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
||| ||||| || || || | ||||| || || | | || |||||
Sbjct 253557 CATCCAAAAGGAATCTACCCTCCATTTGGTGCTACGTCTTCGCGGAGG 253510
Score = 98.7 bits (108), Expect = 7e-16
Identities = 132/184 (72%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668
||||||| || ||||| || ||||| || || || || || ||||| || || || |
Sbjct 255924 AAATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCAT 255865
Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
| || || | |||| | || || || |||||||||||| | || |||||||
Sbjct 255864 CTGATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGATC 255805
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
|||||||||| || || || || || || ||||||| | ||| || ||| ||||||||
Sbjct 255804 AACAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCCGATTACA 255745
Query 23789 ACAT 23792
||||
Sbjct 255744 ACAT 255741
Score = 84.2 bits (92), Expect = 1e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 23737 TTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAA 23796
|| || ||||||||||||||||||||||||| ||||||||| || |||||||| |||
Sbjct 253838 TTGATCTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAA 253779
Query 23797 AAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||| || | ||||| || | | ||||| || ||
Sbjct 253778 AAGGAGTCTACCCTTCATTTGGTCCTGCGTTTGCGTGGTGG 253738
Score = 84.2 bits (92), Expect = 1e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 23737 TTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAA 23796
|| || ||||||||||||||||||||||||| ||||||||| || |||||||| |||
Sbjct 255005 TTGATCTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAA 254946
Query 23797 AAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|| ||||| || | ||||| || | | ||||| || ||
Sbjct 254945 AAGGAGTCTACCCTTCATTTGGTCCTGCGTTTGCGCGGTGG 254905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338002160197448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |