Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq145 161 7e-35 seq1310 141 6e-29 seq454 134 9e-27 >seq145 Length=1338480 Score = 161 bits (178), Expect = 7e-35 Identities = 164/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| |||||||||||||| || || |||||||| || || || || | Sbjct 899038 AATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTC 898979 Query 23670 GGACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||| ||| | || || |||| |||||| || || ||||||||| | || || |||| Sbjct 898978 GGATACTATCGAGCATGTTAAGGCAAAAA-TTCAAGATAAAGAAGGTATTCCCCCCGATC 898920 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| |||||||| || || || |||||||||||||| | || ||||||| || || | Sbjct 898919 AACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTATA 898860 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGT 23819 | || ||||| ||||| || ||||| ||||| Sbjct 898859 ATATCCAAAAGGAGTCTACCTTACACTTAGT 898829 >seq1310 Length=3030561 Score = 141 bits (156), Expect = 6e-29 Identities = 173/235 (74%), Gaps = 1/235 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| || ||||| || || || || || |||||| | || || || | Sbjct 644978 AAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCA 645037 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | ||| ||||| |||||||||||| | || |||||| Sbjct 645038 TCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGAT 645097 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| || || |||||||||||| ||||||| | |||||||| ||||||| Sbjct 645098 CAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATTAC 645157 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841 || || ||||| ||||| || | || || || || | |||| || || |||| Sbjct 645158 AATATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGGTATCA 645212 >seq454 Length=983520 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| ||| | || || ||||| |||||| | || || || | | Sbjct 254903 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCA 254844 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | || || |||||| | || |||||||| Sbjct 254843 GATACCATCGAGAATGTCAAGGCCAAGA-TCCAAGATAAGGAAGGTATTCCCCCAGATCA 254785 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||||||||||||||||||||||| ||||||||| || ||||| Sbjct 254784 ACAACGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAA 254725 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| ||||| || | ||||| || || | ||||| || || Sbjct 254724 CATCCAAAAGGAGTCTACCCTTCATTTGGTATTGCGTTTGCGCGGTGG 254677 Score = 129 bits (142), Expect = 4e-25 Identities = 147/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| | || || ||||| ||||| | |||||||| | | Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCT 254388 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||| | ||||| |||||| | || |||||||| Sbjct 254387 GATACCATTGAGAATGTGAAGGCTAAAA-TCCAAGACAAGGAAGGTATTCCCCCAGATCA 254329 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||||||||| || ||||||| | ||||||||| || ||||| Sbjct 254328 ACAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAA 254269 Query 23790 CATACAAAAAGAGTC 23804 ||| |||||||| || Sbjct 254268 CATCCAAAAAGAATC 254254 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || |||||||| ||| | || || ||||| |||||| | || ||||| | | Sbjct 254675 ATGCAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCA 254616 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | ||||| |||||| | || |||||||| Sbjct 254615 GATACCATCGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGTATTCCTCCAGATCA 254557 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||||| || ||||||||||| || || ||||| | |||||| || ||| ||||| Sbjct 254556 ACAACGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCACCTTGTCCGACTACAA 254497 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || | ||||| || || | ||||| || || Sbjct 254496 CATCCAAAAGGAATCTACTCTCCATTTGGTCTTGCGTTTGCGTGGTGG 254449 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||||||||| || | ||||| || || ||||| | ||||| || | | Sbjct 253736 ATGCAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCA 253677 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | ||||| |||||| | || |||||||| Sbjct 253676 GATACCATCGAGAATGTGAAGGCCAAGA-TCCAAGACAAGGAAGGTATCCCTCCAGATCA 253618 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || || || || || |||||||| | ||| || ||| ||| ||||| Sbjct 253617 ACAGCGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACAA 253558 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| || || || | ||||| || || | | || ||||| Sbjct 253557 CATCCAAAAGGAATCTACCCTCCATTTGGTGCTACGTCTTCGCGGAGG 253510 Score = 98.7 bits (108), Expect = 7e-16 Identities = 132/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 ||||||| || ||||| || ||||| || || || || || ||||| || || || | Sbjct 255924 AAATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCAT 255865 Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 | || || | |||| | || || || |||||||||||| | || ||||||| Sbjct 255864 CTGATACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGATC 255805 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||||||||| || || || || || || ||||||| | ||| || ||| |||||||| Sbjct 255804 AACAGCGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCCGATTACA 255745 Query 23789 ACAT 23792 |||| Sbjct 255744 ACAT 255741 Score = 84.2 bits (92), Expect = 1e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 23737 TTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAA 23796 || || ||||||||||||||||||||||||| ||||||||| || |||||||| ||| Sbjct 253838 TTGATCTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAA 253779 Query 23797 AAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || | ||||| || | | ||||| || || Sbjct 253778 AAGGAGTCTACCCTTCATTTGGTCCTGCGTTTGCGTGGTGG 253738 Score = 84.2 bits (92), Expect = 1e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 23737 TTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAA 23796 || || ||||||||||||||||||||||||| ||||||||| || |||||||| ||| Sbjct 255005 TTGATCTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATCCAA 254946 Query 23797 AAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || | ||||| || | | ||||| || || Sbjct 254945 AAGGAGTCTACCCTTCATTTGGTCCTGCGTTTGCGCGGTGG 254905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002160197448