Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq454 178 3e-39
seq1310 149 1e-30
seq145 136 9e-27
seq1806 129 1e-24
seq344 107 5e-18
seq1283 104 6e-17
seq998 98.7 2e-15
seq936 89.7 1e-12
seq519 86.0 1e-11
seq1039 84.2 5e-11
>seq454
Length=983520
Score = 178 bits (196), Expect = 3e-39
Identities = 172/221 (78%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | || || | ||||| || ||||| ||||||| ||||| |||| || ||
Sbjct 253516 CGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTA 253575
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| |||||||| |||||||| |||||||| || | || ||||| || || || ||||||
Sbjct 253576 CGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCT 253635
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||||||||| ||||||| |||||||| ||||| | ||| || || ||
Sbjct 253636 TCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAG 253695
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| ||||||||||||||||| || | ||| | ||||||
Sbjct 253696 GTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736
Score = 178 bits (196), Expect = 3e-39
Identities = 161/203 (79%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|||||||| ||||| ||||||| ||||| |||| ||| || | |||||||||||||||
Sbjct 254473 TGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCTAGCTGC 254532
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || || ||||| | |||||||| || || ||||||||||||||||| ||||||||
Sbjct 254533 TTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTG 254592
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||||||| |||||||| ||||| | ||| || || || ||||| || ||||| |||
Sbjct 254593 GCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTGATGGTTTTGCCGGTC 254652
Query 225691 AAAGTTTTTATGAACACTTGCAT 225713
|| || || | ||| | ||||||
Sbjct 254653 AAGGTCTTAACGAAGATTTGCAT 254675
Score = 156 bits (172), Expect = 1e-32
Identities = 151/194 (78%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 225520 GATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCG 225579
||||||||||||| ||||| || | |||||| | |||||||| | |||||| || ||
Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313
Query 225580 AAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACA 225639
||||| | |||||||| || || ||||||||||||||||||||||| || |||||||
Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373
Query 225640 GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTT 225699
|| ||||| || || | || || || || ||||| || ||||| |||||||||||
Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433
Query 225700 ATGAACACTTGCAT 225713
| ||| | ||||||
Sbjct 254434 ACGAAAATTTGCAT 254447
Score = 138 bits (152), Expect = 3e-27
Identities = 139/181 (77%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594
|||||||||| || || | |||||||| | |||||| |||||||| || | || |||
Sbjct 255744 TTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGT 255803
Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654
|| || || ||||||||||| |||||||||||||| ||||||| ||||||||| ||
Sbjct 255804 TGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTATCA 255863
Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
|| | |||||| || | || || |||||||| || | || || | ||| | |||||||
Sbjct 255864 GATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCATT 255923
Query 225715 T 225715
|
Sbjct 255924 T 255924
Score = 136 bits (150), Expect = 9e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
|| || || || || ||||||| ||||| || | |||||| | || ||||| || ||
Sbjct 254701 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCCAGTTGT 254760
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| || || || || | |||||||| || || |||||||||||||| |||||||||||
Sbjct 254761 TTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTG 254820
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||| ||| |||||||| ||||| | ||| || || || ||||| || ||||| |||
Sbjct 254821 GCCTTGACATTCTCGATGGTATCTGATGGTTCGACCTCCAAAGTGATGGTTTTGCCGGTC 254880
Query 225691 AAAGTTTTTATGAACACTTGCAT 225713
|| || || | ||| | ||||||
Sbjct 254881 AAGGTCTTAACGAAGATTTGCAT 254903
>seq1310
Length=3030561
Score = 149 bits (164), Expect = 1e-30
Identities = 170/226 (75%), Gaps = 2/226 (1%)
Strand=Plus/Minus
Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551
||| || | || || | ||| || || || || ||||||| ||||||||||| ||||||
Sbjct 645202 ACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGT 645143
Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| |||||||| | || || || |||||||| | |||||||| || || || |||||
Sbjct 645142 GCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACC 645083
Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
||| ||||||||||| ||| |||| ||| |||||||||||| || | || || || |
Sbjct 645082 TTCTTTGTCTTGGAT-TTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCA 645024
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
| ||||| ||||| || |||| ||||| | || | ||||||||
Sbjct 645023 AAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTTT 644978
>seq145
Length=1338480
Score = 136 bits (150), Expect = 9e-27
Identities = 162/220 (74%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554
||| | ||| || | ||| | || || || ||||||| ||| || || || ||||| |
Sbjct 898819 AAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACG 898878
Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614
|||||||| || || || || ||||| || | |||||||| ||||| |||||||||||
Sbjct 898879 ACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTC 898938
Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674
|| ||||| || ||| ||| ||| ||||| || || |||| ||| || || | ||
Sbjct 898939 TTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGT 898998
Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||| ||||| ||||| | ||||| | ||| | |||||||
Sbjct 898999 GATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCATT 899038
>seq1806
Length=15980
Score = 129 bits (142), Expect = 1e-24
Identities = 131/171 (77%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| |||| || || ||| |||| || ||||| ||||| || ||||| || | |||||
Sbjct 1674 CAAATTTATAATGTAATTGTTACTGCCCATGCTTTTGTAATAATTTTTTTCATAGTTATA 1733
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| |||| || || || || || |||||||| || |||||||| |||| || || |||
Sbjct 1734 CCTATTATAATTGGAGGATTTGGTAATTGATTAGTACCTTTAATACTTGGAGCACCAGAT 1793
Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722
|| || ||||| | | || |||||||||||||||||| |||| ||||||
Sbjct 1794 ATAGCATTTCCTCGAATAAATAATATAAGTTTTTGATTATTACCTCCTTCC 1844
Score = 93.3 bits (102), Expect = 1e-13
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||||||||| ||||||||||| ||||||||||| || | ||||| || ||||| || |
Sbjct 2246 TTCAGGATGTCCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCTCCTCCAGC 2187
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
||| ||||| || |||||| ||||||| ||| |||||
Sbjct 2186 TGGGTCAAAGAATGAAGTATTTAAATTTCGATCTGTTAA 2148
>seq344
Length=298626
Score = 107 bits (118), Expect = 5e-18
Identities = 129/175 (74%), Gaps = 4/175 (2%)
Strand=Plus/Plus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| |||| ||||| | | | || || ||||| ||||| || ||||| || | |||||
Sbjct 91609 CAAATTTATAACGTAAATGTCACTGCTCATGCTTTTGTAATCATTTTTTTCATAGTTATA 91668
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCC---- 7667
|| |||| || || || | ||||||||||| || |||||||| || |||| ||
Sbjct 91669 CCTATTATAATTGGAGGACTTGGAAATTGATTAGTACCTTTAATACTTCGTGCACCAGAT 91728
Query 7668 TGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722
||||| || || || | ||||||||||||||||||||| |||| ||||||
Sbjct 91729 AGATATAGCATTCCCTCAAATAAACAATATAAGTTTTTGATTATTACCCCCTTCC 91783
>seq1283
Length=45851
Score = 104 bits (114), Expect = 6e-17
Identities = 127/170 (75%), Gaps = 4/170 (2%)
Strand=Plus/Plus
Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615
|||| || || |||||||| || ||||| ||||| || ||||| ||| | ||||| || |
Sbjct 20057 TTTATAAAGTGATTATTACTGCTCATGCTTTTGTAATAATTTTGTTTATAGTTATACCTG 20116
Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675
|||| || || || |||||||||| || |||| ||| |||||||| | ||||| |
Sbjct 20117 TTATAATTGGAGGACATAGAAATTGATTAGTACCTTCAATACTTGGTGCTTCAGATATAG 20176
Query 7676 CTTTTCCAAGGCTTAACAATATAA--GTTTTTGATTACTACCGCCTTCCT 7723
| ||||| | | || ||| || ||||||||||| |||| ||||||
Sbjct 20177 CATTTCCTCGAAT-AATAATGAAATAGTTTTTGATTATTACC-TCTTCCT 20224
>seq998
Length=886450
Score = 98.7 bits (108), Expect = 2e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 7576 GCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGA 7635
|| ||||| ||||| || ||||| ||| | ||| | || ||| || || || || |||
Sbjct 773180 GCTCATGCTTTTGTAATAATTTTTTTTATAGTTTTACCTATTACAATTGGAGGATTTGGA 773239
Query 7636 AATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAAT 7695
|| ||||| || | |||| | |||||||||| ||||| | ||||| | | || ||
Sbjct 773240 AACTGATTAGTACTTTTAGTACTTGGTGCTCCAGATATAACATTTCCTCGAATAAATAAA 773299
Query 7696 ATAAGTTTTTGATTACTACCGCCTTCCTT 7724
||||||||||||||| |||| ||||| ||
Sbjct 773300 ATAAGTTTTTGATTATTACCTCCTTCTTT 773328
>seq936
Length=4761389
Score = 89.7 bits (98), Expect = 1e-12
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||| || ||||||||||| | ||||||||| | | |||||||| ||||| || |
Sbjct 729877 TTCAGGGTGTCCAAAAAATCAAATTAAATGTTGGTTTAAAATAGGATCTCCTCCCCCAGC 729818
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
||| |||||||| |||||| ||||||| ||| |||||
Sbjct 729817 TGGGTCAAAAAATTAAGTATTTAAATTTCGATCTGTTAA 729779
>seq519
Length=962923
Score = 86.0 bits (94), Expect = 1e-11
Identities = 79/99 (80%), Gaps = 1/99 (1%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||| || ||||||||||| ||||||||||| || | ||||| || ||||| || |
Sbjct 481408 TTCAGGGTGTCCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCTCC-CCAGC 481350
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
||| ||||| || |||||| ||||||| ||| |||||
Sbjct 481349 TGGGTCAAAGAATGAAGTATTTAAATTTCGATCTGTTAA 481311
>seq1039
Length=111486
Score = 84.2 bits (92), Expect = 5e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
|||||| || ||||||||||| |||||||||| || | |||||||| ||||| || |
Sbjct 34414 TTCAGGGTGTCCAAAAAATCAAAATAAATGTTAGTATAAAATAGGATCTCCTCCACCAGC 34473
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
||| ||| |||| || |||||||||| ||| |||||
Sbjct 34474 TGGGTCATAAAATAAGGTGTTAAAATTTCGATCTGTTAA 34512
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192503605573364
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