Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq454 178 3e-39 seq1310 149 1e-30 seq145 136 9e-27 seq1806 129 1e-24 seq344 107 5e-18 seq1283 104 6e-17 seq998 98.7 2e-15 seq936 89.7 1e-12 seq519 86.0 1e-11 seq1039 84.2 5e-11 >seq454 Length=983520 Score = 178 bits (196), Expect = 3e-39 Identities = 172/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||||| || ||||| ||||||| ||||| |||| || || Sbjct 253516 CGAAGACGTAGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTA 253575 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| |||||||| || | || ||||| || || || |||||| Sbjct 253576 CGTCCATCTTCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCT 253635 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||||||||| ||||||| |||||||| ||||| | ||| || || || Sbjct 253636 TCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAG 253695 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||||||||| || | ||| | |||||| Sbjct 253696 GTGATGGTCTTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 |||||||| ||||| ||||||| ||||| |||| ||| || | ||||||||||||||| Sbjct 254473 TGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTCTAGCTGC 254532 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| | |||||||| || || ||||||||||||||||| |||||||| Sbjct 254533 TTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTGGATCTTG 254592 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||||||| |||||||| ||||| | ||| || || || ||||| || ||||| ||| Sbjct 254593 GCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTGATGGTTTTGCCGGTC 254652 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | |||||| Sbjct 254653 AAGGTCTTAACGAAGATTTGCAT 254675 Score = 156 bits (172), Expect = 1e-32 Identities = 151/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 225520 GATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCG 225579 ||||||||||||| ||||| || | |||||| | |||||||| | |||||| || || Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313 Query 225580 AAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACA 225639 ||||| | |||||||| || || ||||||||||||||||||||||| || ||||||| Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373 Query 225640 GCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTT 225699 || ||||| || || | || || || || ||||| || ||||| ||||||||||| Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433 Query 225700 ATGAACACTTGCAT 225713 | ||| | |||||| Sbjct 254434 ACGAAAATTTGCAT 254447 Score = 138 bits (152), Expect = 3e-27 Identities = 139/181 (77%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 225535 TTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGT 225594 |||||||||| || || | |||||||| | |||||| |||||||| || | || ||| Sbjct 255744 TTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGCTGT 255803 Query 225595 TGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCT 225654 || || || ||||||||||| |||||||||||||| ||||||| ||||||||| || Sbjct 255804 TGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTATCA 255863 Query 225655 GAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || | |||||| || | || || |||||||| || | || || | ||| | ||||||| Sbjct 255864 GATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCATT 255923 Query 225715 T 225715 | Sbjct 255924 T 255924 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || || || ||||||| ||||| || | |||||| | || ||||| || || Sbjct 254701 TGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCCAGTTGT 254760 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || || || | |||||||| || || |||||||||||||| ||||||||||| Sbjct 254761 TTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTTG 254820 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| |||||||| ||||| | ||| || || || ||||| || ||||| ||| Sbjct 254821 GCCTTGACATTCTCGATGGTATCTGATGGTTCGACCTCCAAAGTGATGGTTTTGCCGGTC 254880 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| | |||||| Sbjct 254881 AAGGTCTTAACGAAGATTTGCAT 254903 >seq1310 Length=3030561 Score = 149 bits (164), Expect = 1e-30 Identities = 170/226 (75%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || | ||| || || || || ||||||| ||||||||||| |||||| Sbjct 645202 ACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGT 645143 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || |||||||| | |||||||| || || || ||||| Sbjct 645142 GCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACC 645083 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| ||||||||||| ||| |||| ||| |||||||||||| || | || || || | Sbjct 645082 TTCTTTGTCTTGGAT-TTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCA 645024 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | ||||| ||||| || |||| ||||| | || | |||||||| Sbjct 645023 AAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCATTTT 644978 >seq145 Length=1338480 Score = 136 bits (150), Expect = 9e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 225495 AAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCT 225554 ||| | ||| || | ||| | || || || ||||||| ||| || || || ||||| | Sbjct 898819 AAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACG 898878 Query 225555 CCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTC 225614 |||||||| || || || || ||||| || | |||||||| ||||| ||||||||||| Sbjct 898879 ACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTC 898938 Query 225615 CTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGT 225674 || ||||| || ||| ||| ||| ||||| || || |||| ||| || || | || Sbjct 898939 TTTATCTTGAATTTTTGCCTTAACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGT 898998 Query 225675 GATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| ||||| ||||| | ||||| | ||| | ||||||| Sbjct 898999 GATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCATT 899038 >seq1806 Length=15980 Score = 129 bits (142), Expect = 1e-24 Identities = 131/171 (77%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| |||| || ||||| ||||| || ||||| || | ||||| Sbjct 1674 CAAATTTATAATGTAATTGTTACTGCCCATGCTTTTGTAATAATTTTTTTCATAGTTATA 1733 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || || |||||||| || |||||||| |||| || || ||| Sbjct 1734 CCTATTATAATTGGAGGATTTGGTAATTGATTAGTACCTTTAATACTTGGAGCACCAGAT 1793 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 || || ||||| | | || |||||||||||||||||| |||| |||||| Sbjct 1794 ATAGCATTTCCTCGAATAAATAATATAAGTTTTTGATTATTACCTCCTTCC 1844 Score = 93.3 bits (102), Expect = 1e-13 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||| ||||||||||| || | ||||| || ||||| || | Sbjct 2246 TTCAGGATGTCCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCTCCTCCAGC 2187 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| ||||| || |||||| ||||||| ||| ||||| Sbjct 2186 TGGGTCAAAGAATGAAGTATTTAAATTTCGATCTGTTAA 2148 >seq344 Length=298626 Score = 107 bits (118), Expect = 5e-18 Identities = 129/175 (74%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| ||||| | | | || || ||||| ||||| || ||||| || | ||||| Sbjct 91609 CAAATTTATAACGTAAATGTCACTGCTCATGCTTTTGTAATCATTTTTTTCATAGTTATA 91668 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCC---- 7667 || |||| || || || | ||||||||||| || |||||||| || |||| || Sbjct 91669 CCTATTATAATTGGAGGACTTGGAAATTGATTAGTACCTTTAATACTTCGTGCACCAGAT 91728 Query 7668 TGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCC 7722 ||||| || || || | ||||||||||||||||||||| |||| |||||| Sbjct 91729 AGATATAGCATTCCCTCAAATAAACAATATAAGTTTTTGATTATTACCCCCTTCC 91783 >seq1283 Length=45851 Score = 104 bits (114), Expect = 6e-17 Identities = 127/170 (75%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| || || |||||||| || ||||| ||||| || ||||| ||| | ||||| || | Sbjct 20057 TTTATAAAGTGATTATTACTGCTCATGCTTTTGTAATAATTTTGTTTATAGTTATACCTG 20116 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 |||| || || || |||||||||| || |||| ||| |||||||| | ||||| | Sbjct 20117 TTATAATTGGAGGACATAGAAATTGATTAGTACCTTCAATACTTGGTGCTTCAGATATAG 20176 Query 7676 CTTTTCCAAGGCTTAACAATATAA--GTTTTTGATTACTACCGCCTTCCT 7723 | ||||| | | || ||| || ||||||||||| |||| |||||| Sbjct 20177 CATTTCCTCGAAT-AATAATGAAATAGTTTTTGATTATTACC-TCTTCCT 20224 >seq998 Length=886450 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 7576 GCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGA 7635 || ||||| ||||| || ||||| ||| | ||| | || ||| || || || || ||| Sbjct 773180 GCTCATGCTTTTGTAATAATTTTTTTTATAGTTTTACCTATTACAATTGGAGGATTTGGA 773239 Query 7636 AATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAAT 7695 || ||||| || | |||| | |||||||||| ||||| | ||||| | | || || Sbjct 773240 AACTGATTAGTACTTTTAGTACTTGGTGCTCCAGATATAACATTTCCTCGAATAAATAAA 773299 Query 7696 ATAAGTTTTTGATTACTACCGCCTTCCTT 7724 ||||||||||||||| |||| ||||| || Sbjct 773300 ATAAGTTTTTGATTATTACCTCCTTCTTT 773328 >seq936 Length=4761389 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||||||||| | ||||||||| | | |||||||| ||||| || | Sbjct 729877 TTCAGGGTGTCCAAAAAATCAAATTAAATGTTGGTTTAAAATAGGATCTCCTCCCCCAGC 729818 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| |||||||| |||||| ||||||| ||| ||||| Sbjct 729817 TGGGTCAAAAAATTAAGTATTTAAATTTCGATCTGTTAA 729779 >seq519 Length=962923 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||||||||| ||||||||||| || | ||||| || ||||| || | Sbjct 481408 TTCAGGGTGTCCAAAAAATCAAAATAAATGTTGGTATAAAATAGGGTCTCCTCC-CCAGC 481350 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| ||||| || |||||| ||||||| ||| ||||| Sbjct 481349 TGGGTCAAAGAATGAAGTATTTAAATTTCGATCTGTTAA 481311 >seq1039 Length=111486 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||||||||| |||||||||| || | |||||||| ||||| || | Sbjct 34414 TTCAGGGTGTCCAAAAAATCAAAATAAATGTTAGTATAAAATAGGATCTCCTCCACCAGC 34473 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| ||| |||| || |||||||||| ||| ||||| Sbjct 34474 TGGGTCATAAAATAAGGTGTTAAAATTTCGATCTGTTAA 34512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192503605573364