Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq925 257 1e-63 >seq925 Length=3171676 Score = 257 bits (284), Expect = 1e-63 Identities = 496/720 (69%), Gaps = 20/720 (3%) Strand=Plus/Minus Query 4371 ACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCA 4430 || ||||| || || ||||| ||||| ||||| | |||||| || || || ||| Sbjct 2021803 ACCAGCAAACGATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCA 2021744 Query 4431 ATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTG 4490 |||| | ||||||| |||| ||| || || |||||||| || | || ||||| | Sbjct 2021743 ATTAGGTTTACAGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGAT 2021684 Query 4491 ATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACAC 4550 || || || | || || | ||||| | || || | | |||| |||||| Sbjct 2021683 ATGATTTCAATAATACGTTCCCTGCTGGGTTTCTGTATCAAATGTTGGAACATCAAACAC 2021624 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCG 4610 || ||||||||||| ||||| ||||| | |||| || || || || ||||| || Sbjct 2021623 GCGAAATCACAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCC 2021564 Query 4611 GGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATG 4670 ||||||||||| | || ||||||||||| || | ||||| || |||||||||| Sbjct 2021563 GGCATTAAACCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATG 2021504 Query 4671 CCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA-GCTGGCTTTGTCTTTAAT 4729 ||||| || |||||||| || | || || || || || | ||||| ||| Sbjct 2021503 CCTTCAACAGCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGA-AAT 2021445 Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAAC-GCACGGAATTGTGTATATAGCGTT-- 4786 ||| | ||||| | ||| || |||||| ||| || || || | || || || Sbjct 2021444 CCAAGCCAGCGCCCAATCAGCCTTACGCTTAACAGCA-GGCATCGTCTCAATTGCATTGA 2021386 Query 4787 --AAATAATTTACTTTTTTCAAATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 ||||| | | |||| || || ||| | |||||| ||||| |||| || |||||| Sbjct 2021385 ACAAATAGTCT-CTTTGTT----TGCCGTCCTTAATATATGTGTCAATTAATATGCTATA 2021331 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 |||||| || || | |||||| ||||| || ||||| ||||| || || | || || || Sbjct 2021330 CATTTCTGAGTGCACATTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGT 2021271 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 |||||||||||| | || || | |||||| || ||||| ||||| ||||| || ||| Sbjct 2021270 TACTTGAACTTCTTGACTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGC 2021211 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGT-ACTGT--TCGTCAGGCTTAAGTTTTTT 5020 |||||||| || || || || || | ||| | || | | ||||| ||||| | Sbjct 2021210 GGCAAAAAAGGCTAATACGTGCGAAACAAAATGTCTTTCGTTGTCAG---TAAGTCGTGC 2021154 Query 5021 CCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 ||| | ||||| || | |||||| || ||||| || |||||||| |||||||| || Sbjct 2021153 CCAATCATCTAAATCCTTGGATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTCTGC 2021094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427040200371398