Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1762 527 9e-145 seq925 275 9e-69 >seq1762 Length=809008 Score = 527 bits (584), Expect = 9e-145 Identities = 1235/1850 (67%), Gaps = 30/1850 (2%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || ||||| || | ||| ||||| || ||||||| ||| |||| || || ||| Sbjct 695450 GCTGGCTTTGTGCGCAAATAATACATGCCGGTTTTTAAACCTGCTTTCCAACCATAAAAA 695391 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || || || |||||| ||| |||| || |||| || ||||| | || |||||| Sbjct 695390 TGTATAGAAGTAAGTTTGCCGTAATTAGGTTCTGCTACGTGTATATTAAAGGATTGACTT 695331 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 || ||||| || || || | |||||| ||||||||||| || ||| | ||| ||| Sbjct 695330 TGGTCGATAAAGGCACCACGATCAGCAGCCATTTTTATGGAAGTTTTTACCGAAATCTCC 695271 Query 76983 CAAATAGTTTTGAAAACTTGTTTGA-TATCATCTGGA----AGGTTTG-TATTTTGAATG 77036 |||| ||||| | | ||| | ||| | ||| || || | ||||| || Sbjct 695270 CAAACGGTTTTATACA---GTTCGCGTATGTTTTGGGGTATAGATTCAATGTTTTGTATT 695214 Query 77037 GAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTT 77096 ||||||| | |||||| ||| || |||||||||| ||| || | || || Sbjct 695213 GAACCACGGCTAGTGATAATTTGATTTTTCATATCATCATCCCATAAGCCCAATTCAGTA 695154 Query 77097 AAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTG 77156 | | | | | |||| | || || | ||||| || || || | || | ||||| Sbjct 695153 AGGTCACGCAACAAATGATGGTTTACAACCTGAAACTCACCGGAAAGCACACGGCGAGTA 695094 Query 77157 TAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAA 77216 |||||||| ||| || || || | ||||||||| || |||| ||||| || || ||| Sbjct 695093 TAAATATTGGAGGTGTACGGCTCAAAAGATTCATTATTACCCATTATTTGTGCCGTTGAA 695034 Query 77217 GCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCT 77276 || |||||||| ||||| | | |||| || | | ||||||| | | ||||| ||| Sbjct 695033 GCGGTTGGCATGGGTGCAAGTAGTAAAGAGTTGCGTACACCATGTTTCTTAATTTTTTCT 694974 Query 77277 TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGA 77336 || | | |||||| ||| || || | || |||||| | ||| || |||| | Sbjct 694973 TTCAACTCAGTCCAATTCCATAGTTCAGTCGGCTTTTTATCCCACATATCATACTGTAAA 694914 Query 77337 ATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGT 77396 || || || ||| | ||| || | ||| ||||| ||||| || | ||||||| | | Sbjct 694913 ATACCTTTGCTAACCGGTGAACCTTCATAAGTTTCGTAAGGCCCAAATTTTTCAGCCAAT 694854 Query 77397 TCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 77456 || || || ||||| || || || || ||||||||||| || || | | ||| | Sbjct 694853 TCGCAGCTGGCTTCTAAAGCACCATAGTAAATTGTTTCAAATATTTGTTGATTCAATAGG 694794 Query 77457 TGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGA 77516 ||||| || || | ||||| | | || || || || |||||||| || || Sbjct 694793 AATGCTTGTTCGCTTTCGTAAGGATAGCGCATGAGGATTAATGCGTCTGCTAAACCTTGT 694734 Query 77517 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAA 77576 || |||||||| || || | ||| || ||| || | || ||||| || | ||||| Sbjct 694733 ACACCAATACCGATCGGACGATGCCTGAAATTAGATTTCTTGGCTTCAGGCAATGGATAG 694674 Query 77577 TAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAG- 77635 | || || || || |||||||| | ||| | || ||| || ||||| || Sbjct 694673 TGGTTTATATCAATGATTTTATTTAAATTCCGCGTCACGGTCTTAGTGACTTCCTTGAGG 694614 Query 77636 --TTTAAGAAAATCAAATCTTCCATCTA---TAACAAACATGTTCAAAGCTATAGATGCT 77690 ||||| |||| || || ||| |||||||||| || | || || |||||| Sbjct 694613 CGTTTAA---AATCGTATTTTTTGTCTGGTGTAACAAACATATTGAGGGCAATCGATGCT 694557 Query 77691 AGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTA 77750 | ||| || || |||||||| | || | ||| | | || || || |||| |||| Sbjct 694556 AAATTGCATACAGCTACCTCGTCAGGTGCTGAATACTCAACAATTTCTGTGCATAAATTA 694497 Query 77751 CTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAA 77810 || ||||| || ||||| | ||| ||||| || |||||| |||| || | |||||||| Sbjct 694496 CTGCATTTAATTGTGCCAATATTCTGTTGATTACTCTTTCTATTACAAGCATCCTTATAT 694437 Query 77811 AGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA 77870 | ||| |||| || || || || | ||| ||||| ||||| || ||| | | || | Sbjct 694436 AACATATACGGTGTGCCCGTCTCCACCTGCGATTCTATAATGGAAAACCAAAGG-CTTTG 694378 Query 77871 GCTTTTATCATAGATTTGTATCGCCTCTCTCTT--TCATATTGAGTATATAGCCGTTCAA 77928 | |||| | | | | || | | || |||| ||||||| || |||| | ||| | Sbjct 694377 GGCTTTAACTTTCTTAT-TAGCACGTCCTTCTTGTTCATATTTTGTGTATAACTTTTCGA 694319 Query 77929 ATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGT 77988 |||| || |||||||| || | ||||| || || | || ||| ||||| |||||||| | Sbjct 694318 ATTCTTCACCCCAAACTTCGTGTAATCCGGGACACTTATGTGGACACATTAATGACCAAT 694259 Query 77989 CACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGAT 78048 | ||| | | | ||| || |||||||| | ||||||||||| | |||| ||||| || Sbjct 694258 CCTCATTTGCTTCAACACGCTTCATAAATAAGTCAGGTATCCACAAAGCATAAAATAAAT 694199 Query 78049 CTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATAT 78108 ||| | || ||| || || ||||| ||||| || || | ||| | ||| || | ||||| Sbjct 694198 CTCTAGCTCGATGCTCCTCTTTTCCGGTATTTTTCTTTAAATCCAAAAATTCAAAAATAT 694139 Query 78109 CAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGAT 78168 ||| ||||| || || | ||||| || | | |||| ||||||||| || || |||| Sbjct 694138 CAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTGGTCGTTTACCGCCACCTTGAT 694079 Query 78169 CTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTC 78228 | | ||| | || |||||| |||| | ||||||||| | | || || ||||| | Sbjct 694078 CCACATAACGTGCTACGTTATTGAAAACACGCAACATTGGTACCAAGCCATTTGATGTGC 694019 Query 78229 CATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTC 78288 |||| || || | ||| || | || | ||||| ||| | || || || || | Sbjct 694018 CATTCGTGCCCGCAATCGAAGTGCCTTTAGCGCGTATACAATGAACATTTAAGCCAATAC 693959 Query 78289 CTCCTGCCATCTTAGATATTAGAGCGCA---ACGTTTCAATGTATCGTAGATACCCTCTA 78345 | || || ||||| || | || || | || | ||||| | || || || | Sbjct 693958 CACCAGCAGATTTAGAAATCAATGCACATTGATGTGCCGATGTA---AATATGCCATCAA 693902 Query 78346 TACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 78404 | ||| || | ||| ||||| |||||||| ||| | ||| | || || | Sbjct 693901 TGGAGTCGTCGACCATAGTTAA-TAGAAAACATGAAGATAATTGTGGCTGTTTGGTAGCG 693843 Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTT 78464 ||| ||| | ||| || || ||||| ||||| | ||| ||||| | ||||||||| Sbjct 693842 GCAGCAAAGAGTGTTGGTGAGGCATGTGTAAAGTAACGTTCTGAAAGCAAATTGTATGTG 693783 Query 78465 TCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGC 78524 || || || | ||||| ||| ||| || || | ||||||||||| ||||||||| Sbjct 693782 TCGATTGCCGCATCTATATCCTCACCATGTATACCAATGGCTACACGCATTAACATATGC 693723 Query 78525 TGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTA 78584 || || | |||||| | ||| ||| | || | || || || ||| | ||| ||| Sbjct 693722 TGTGGCCGTTCAACAATTTTACCATTCAACTTGAGTAAATAGGAACGTTCAAGAGTCTTA 693663 Query 78585 AAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634 || || ||||| || || || || | || |||||||| |||| || Sbjct 693662 AACCCGAAATAATTATAACCGAAATCACGATCATAAATAATTGCAGAGTT 693613 >seq925 Length=3171676 Score = 275 bits (304), Expect = 9e-69 Identities = 485/701 (69%), Gaps = 7/701 (1%) Strand=Plus/Minus Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 ||| || |||||||| ||||| ||| | ||||||||| || || || || || Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTAT--CGAT 48092 |||| || || || | || |||||||| || | || || || ||| || | || Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGATTTCAAT 2021673 Query 48093 GTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCA 48152 ||| ||| ||| || ||| | | |||||||| ||||| ||||| || |||||| Sbjct 2021672 AATAC-GTTCCCTG-CTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAATCA 2021615 Query 48153 CAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGT 48212 ||||| | ||| || || | || || || || || ||||| | || ||||||| Sbjct 2021614 CAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTAAA 2021555 Query 48213 CCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACG 48272 |||||||| || |||||||| |||| || ||| || ||||||||||||||| || Sbjct 2021554 CCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAACA 2021495 Query 48273 GCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT-CGTTGTGTA--TCCACCGTTGT 48329 || |||||||| | | | || || | | || | ||| | |||| | Sbjct 2021494 GCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAAGCCAGC 2021435 Query 48330 GCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 48389 |||||||||||||| ||| ||| |||||| || || || ||||| || | | ||| | Sbjct 2021434 GCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATAGTCT 2021375 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 ||| |||| || |||| || || || ||||| | ||||||||||| ||||| | | Sbjct 2021374 CTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTGCACA 2021315 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 ||||| || || || ||||| ||||| ||||| | ||| || || | || || || | Sbjct 2021314 TTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTCTTGA 2021255 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569 | || ||||| ||||||| |||||||| || ||||| || |||||||| |||||| Sbjct 2021254 CTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGCTAAT 2021195 Query 48570 ACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTT 48629 || || || ||||| | |||||||| ||| ||| ||| |||| | ||| || Sbjct 2021194 ACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAATCCTTG 2021135 Query 48630 GATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 |||| |||||| ||||| | |||||||| || || ||||| Sbjct 2021134 GATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTCTGC 2021094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694653117851840