Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1762 545 3e-150 seq925 269 4e-67 >seq1762 Length=809008 Score = 545 bits (604), Expect = 3e-150 Identities = 1245/1862 (67%), Gaps = 30/1862 (2%) Strand=Plus/Minus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 ||||| || |||| | | ||||| ||||| || | ||| ||||| || ||||||| | Sbjct 695471 GTGAATTGTATGGCATTTGCCGCTGGCTTTGTGCGCAAATAATACATGCCGGTTTTTAAA 695412 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATA 75496 || |||| || || ||||| || || |||||| ||| | || || |||| Sbjct 695411 CCTGCTTTCCAACCATAAAAATGTATAGAAGTAAGTTTGCCGTAATTAGGTTCTGCTACG 695352 Query 75497 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 75556 || ||||| | || |||||||| ||||| || || || | |||||| ||||||||||| Sbjct 695351 TGTATATTAAAGGATTGACTTTGGTCGATAAAGGCACCACGATCAGCAGCCATTTTTATG 695292 Query 75557 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGA-TATCATCTGGA-- 75613 || ||| | ||| ||||||| ||||| | | ||| | ||| | ||| Sbjct 695291 GAAGTTTTTACCGAAATCTCCCAAACGGTTTTATACA---GTTCGCGTATGTTTTGGGGT 695235 Query 75614 --AGATTTG-TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATCA 75670 ||||| | ||||| || || || | || |||||| ||| || || |||||| Sbjct 695234 ATAGATTCAATGTTTTGTATTGAACCACGGCTAGTGATAATTTGATTTTTCATATCATCA 695175 Query 75671 TTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCT 75730 | ||| || || || | | | | | |||| | || |||| ||||| || Sbjct 695174 TCCCATAAGCCCAATTCAGTAAGGTCACGCAACAAATGATGGTTTACAACCTGAAACTCA 695115 Query 75731 CCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTT 75790 || || | || | ||||| |||||||| ||| || || || | ||||||||| || Sbjct 695114 CCGGAAAGCACACGGCGAGTATAAATATTGGAGGTGTACGGCTCAAAAGATTCATTATTA 695055 Query 75791 CCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGA 75850 |||| ||||| || |||||||| || ||||| ||||| | | |||| || | | | Sbjct 695054 CCCATTATTTGTGCCGTTGAAGCGGTTGGCATGGGTGCAAGTAGTAAAGAGTTGCGTACA 694995 Query 75851 CCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACA 75910 |||||| | | ||||| ||||| | | |||||| ||| || || | || | Sbjct 694994 CCATGTTTCTTAATTTTTTCTTTCAACTCAGTCCAATTCCATAGTTCAGTCGGCTTTTTA 694935 Query 75911 TCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAA 75970 ||||| | ||| || |||| ||| || |||||| | ||| || | ||| ||||||||| Sbjct 694934 TCCCACATATCATACTGTAAAATACCTTTGCTAACCGGTGAACCTTCATAAGTTTCGTAA 694875 Query 75971 GTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCG 76030 | ||| |||||||| | |||||| || || ||||| ||||| || ||||||||||| Sbjct 694874 GGCCCAAATTTTTCAGCCAATTCGCAGCTGGCTTCTAAAGCACCATAGTAAATTGTTTCA 694815 Query 76031 AAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATA 76090 || || | | ||| | |||| || || ||||||| | | || || Sbjct 694814 AATATTTGTTGATTCAATAGGAATGCTTGTTCGCTTTCGTAAGGATAGCGCATGAGGATT 694755 Query 76091 AATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATT 76150 ||||| ||||||| || || || |||||||| || || | ||| || ||| || | Sbjct 694754 AATGCGTCTGCTAAACCTTGTACACCAATACCGATCGGACGATGCCTGAAATTAGATTTC 694695 Query 76151 TCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACT 76210 | ||||| || | || || | || ||||| || |||||||| | ||| | || Sbjct 694694 TTGGCTTCAGGCAATGGATAGTGGTTTATATCAATGATTTTATTTAAATTCCGCGTCACG 694635 Query 76211 ACTTTAACCACGTCCTTTAG---TTTGAGAAAATCAAATTTTCCATCTA---TCACAAAC 76264 ||| || ||||| || ||| |||||| ||||| ||| | |||||| Sbjct 694634 GTCTTAGTGACTTCCTTGAGGCGTTT---AAAATCGTATTTTTTGTCTGGTGTAACAAAC 694578 Query 76265 ATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGT 76324 ||||| || || || ||||||| ||| || || |||||||| | || | ||| | Sbjct 694577 ATATTGAGGGCAATCGATGCTAAATTGCATACAGCTACCTCGTCAGGTGCTGAATACTCA 694518 Query 76325 ATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTT 76384 | || || ||||||| |||||| || || || || |||| ||| ||||| || |||||| Sbjct 694517 ACAATTTCTGTGCATAAATTACTGCATTTAATTGTGCCAATATTCTGTTGATTACTCTTT 694458 Query 76385 TTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATA 76444 | ||||| | |||||||| | | | |||| || || || || | ||| ||||| ||| Sbjct 694457 CTATTACAAGCATCCTTATATAACATATACGGTGTGCCCGTCTCCACCTGCGATTCTATA 694398 Query 76445 ATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTT--TCAT 76502 || || ||| | | | ||||| | | | || || | | || |||| |||| Sbjct 694397 ATGGAAAACCAAAGGCTTTGGGCTTTAACTTTC--TTATTAGCACGTCCTTCTTGTTCAT 694340 Query 76503 ATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCAT 76562 ||| ||| |||||| ||| ||||| || |||||||| || | || || ||||| | || Sbjct 694339 ATTTTGTGTATAACTTTTCGAATTCTTCACCCCAAACTTCGTGTAATCCGGGACACTTAT 694280 Query 76563 TCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTA 76622 |||||||| |||||||| || ||| | | | ||| || |||||||| | ||||||| Sbjct 694279 GTGGACACATTAATGACCAATCCTCATTTGCTTCAACACGCTTCATAAATAAGTCAGGTA 694220 Query 76623 TCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAA 76682 |||| | |||| ||||| ||||| | || | | || || ||||| ||||| || || | Sbjct 694219 TCCACAAAGCATAAAATAAATCTCTAGCTCGATGCTCCTCTTTTCCGGTATTTTTCTTTA 694160 Query 76683 GATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCG 76742 ||| | || || | |||||||| ||||| || || | ||||| || | | | || | Sbjct 694159 AATCCAAAAATTCAAAAATATCAGCGTGCCAAGGCTCCAAGTATATAGCAAAAGCTCCTG 694100 Query 76743 GTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTG 76802 |||||||| || || ||||| | ||| | || |||||| |||| | |||||||| Sbjct 694099 GTCGTTTACCGCCACCTTGATCCACATAACGTGCTACGTTATTGAAAACACGCAACATTG 694040 Query 76803 GAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATAT 76862 | | | ||| || ||||| ||||| || || | ||| || | || || || ||| Sbjct 694039 GTACCAAGCCATTTGATGTGCCATTCGTGCCCGCAATCGAAGTGCCTTTAGCGCGTATAC 693980 Query 76863 TACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA---GCGTTTCA 76919 | || | || ||| || || || || |||||| || | ||||| || | Sbjct 693979 AATGAACATTTAAGCCAATACCACCAGCAGATTTAGAAATCAATGCACATTGATGTGCCG 693920 Query 76920 ATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGAC 76978 |||| | | ||||| || || || || | ||| ||||| |||||||| ||| Sbjct 693919 ATGT---AAATATGCCATCAATGGAGTCGTCGACCATAGTTAA-TAGAAAACATGAAGAT 693864 Query 76979 ATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTT 77038 | ||| | || || | ||| ||| | ||| || || ||||| || || | | Sbjct 693863 AATTGTGGCTGTTTGGTAGCGGCAGCAAAGAGTGTTGGTGAGGCATGTGTAAAGTAACGT 693804 Query 77039 TCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACA 77098 || ||||| | ||||||||| || || | || ||||||||| ||| || || | Sbjct 693803 TCTGAAAGCAAATTGTATGTGTCGATTGCCGCATCTATATCCTCACCATGTATACCAATG 693744 Query 77099 GCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAG 77158 || |||||||| ||||||||||| || ||||| ||| | ||| ||| | || | || Sbjct 693743 GCTACACGCATTAACATATGCTGTGGCCGTTCAACAATTTTACCATTCAACTTGAGTAAA 693684 Query 77159 TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATA 77218 || || ||| | ||| ||||| || ||||| || || || || | || |||||| Sbjct 693683 TAGGAACGTTCAAGAGTCTTAAACCCGAAATAATTATAACCGAAATCACGATCATAAATA 693624 Query 77219 AT 77220 || Sbjct 693623 AT 693622 >seq925 Length=3171676 Score = 269 bits (298), Expect = 4e-67 Identities = 483/701 (69%), Gaps = 7/701 (1%) Strand=Plus/Minus Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 ||| || |||||||| ||||| ||| | ||||||||| || || || || || Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733 Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT--CGAT 46581 |||| || || || | || ||||||||||| | || || || ||||| || | || Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGATTTCAAT 2021673 Query 46582 GTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCA 46641 ||| ||| ||| || ||| || |||||||||| ||||| ||||| || |||||| Sbjct 2021672 AATAC-GTTCCCTG-CTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAATCA 2021615 Query 46642 CAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGT 46701 ||||| | || || || | || || || || || ||||| | || ||||||| Sbjct 2021614 CAATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTAAA 2021555 Query 46702 CCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACA 46761 ||||| || || |||||||| || | || ||| || ||||||||||||||| ||| Sbjct 2021554 CCACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAACA 2021495 Query 46762 GCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT---ATGAATCCACCTTTGA 46818 || || ||||| | | | || || | | ||| || | |||||| | Sbjct 2021494 GCGGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAAGCCAGC 2021435 Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 |||||||||||||| ||| ||| |||||| || || || ||||| || | | ||| | Sbjct 2021434 GCCCAATCAGCCTTACGCTTAACAGCAGGCATCGTCTCAATTGCATTGAACAAATAGTCT 2021375 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 ||| | | || |||| |||||| || ||||| | |||||||||||||| || | Sbjct 2021374 CTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTGCACA 2021315 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 ||||| ||||| || ||||| ||||| ||||| | || || || | || || ||| | Sbjct 2021314 TTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTCTTGA 2021255 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 | || ||||| |||||| ||||| || || ||||| || |||||||| || ||| Sbjct 2021254 CTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGCTAAT 2021195 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTT 47118 || || || ||||| | |||| | | ||| ||| ||| |||| | ||| || Sbjct 2021194 ACGTGCGAAACAAAATGTCTTTCGTTGTCAGTAAGTCGTGCCCAATCATCTAAATCCTTG 2021135 Query 47119 GATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 |||| |||||| ||||| | ||||| || ||||| ||||| Sbjct 2021134 GATAAATCTACCTCTTCCACGGTCCAAAAAGACGCTTCTGC 2021094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712918305505920