Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1310 111 4e-19 seq454 104 5e-17 seq145 100 7e-16 >seq1310 Length=3030561 Score = 111 bits (122), Expect = 4e-19 Identities = 152/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || ||||| |||||||| |||||||||| ||||| | |||||||| | Sbjct 645187 CAAG-TGAAGGGTTGACTCCTTTTGGATATTGTAATCGGACAAAGTGCGACCATCTTCCA 645129 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| | | || || || | | ||| ||||| || ||||| | Sbjct 645128 ATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGTGGGATACCTTCTTTGTCTTGGA 645069 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||||||| | || | | |||| || ||| || || | ||| || || || | Sbjct 645068 TTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCGACCTCCAAAGTGATGGTCTTAC 645009 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || || || || || || | ||||||||| Sbjct 645008 CAGTCAGTGTTTTGACAAAAATCTGCATTTT 644978 >seq454 Length=983520 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||| || ||||| || |||||||||||||| |||| ||| || | |||||| Sbjct 253525 AGCACCAAATGGAGGGTAGATTCCTTTTGGATGTTGTAGTCGGATAATGTACGTCCATCT 253584 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || | | ||| || || | | ||| |||||||| ||| Sbjct 253585 TCCAGCTGCTTACCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCT 253644 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| |||| | | | ||||| || ||||| | || || || Sbjct 253645 TGGATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTC 253704 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| | |||||| ||||| | ||||| Sbjct 253705 TTGCCCGTCAAAGTCTTAACGAAAATTTGCAT 253736 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| |||||||| |||||||||||||| || | ||||| | || ||||| || Sbjct 254700 ATGAAGGGTAGACTCCTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCGTCTTCCAGTTG 254759 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| ||||| || || | | || || || | | || |||||||| ||||| || || Sbjct 254760 TTTGCCGGCAAAAATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTATCTTGGATCTT 254819 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| |||| | | | ||||| || || || | ||| || |||||||| || Sbjct 254820 GGCCTTGACATTCTCGATGGTATCTGATGGTTCGACCTCCAAAGTGATGGTTTTGCCGGT 254879 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||||| ||||| Sbjct 254880 CAAGGTCTTAACGAAGATTTGCAT 254903 Score = 100 bits (110), Expect = 7e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| |||||||| || |||||||||||||| |||| || || | |||||||| Sbjct 254466 GACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCATCTTC 254525 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 ||| || ||||| ||||| | | || || || | | || |||||||| || || Sbjct 254526 TAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGATCTGGAGGAATACCTTCCTTGTCCTG 254585 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || || ||| |||| | | | ||||| || || || | ||| || ||||| Sbjct 254586 GATCTTGGCCTTCACATTCTCGATGGTATCTGATGGTTCAACCTCCAAAGTGATGGTTTT 254645 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || | ||||| ||||||| ||||| Sbjct 254646 GCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 151911 GACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCG 151970 || ||||||||||||||||| || | ||||| | |||||||| | || ||||| Sbjct 254254 GATTCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCA 254313 Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030 ||||| | | || || || | | || |||||||| ||||| ||||| || ||| Sbjct 254314 AAGATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACA 254373 Query 152031 GTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090 |||| | | | || || ||| ||||| | || || |||||||| || | ||| || Sbjct 254374 TTCTCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTA 254433 Query 152091 ACGAAGACCTGCAT 152104 ||||| | ||||| Sbjct 254434 ACGAAAATTTGCAT 254447 >seq145 Length=1338480 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 |||||||| |||||||| || || || |||||||| | |||||||| || ||| || Sbjct 898841 GTAGACTCCTTTTGGATATTATAGTCAGCTAAAGTACGACCATCTTCCAGTTGTTTTCCC 898900 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 ||||| || | | || || || | | || ||||| || |||||||||||| || Sbjct 898901 GCGAAAATTAAACGTTGTTGATCGGGGGGAATACCTTCTTTATCTTGAATTTTTGCCTTA 898960 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| ||| | | || || || || |||||||| || || || |||||||| || Sbjct 898961 ACATGCTCGATAGTATCCGAGGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 899020 Query 152088 TTCACGAAGACCTGCATT 152105 |||||||| | |||||| Sbjct 899021 TTCACGAAAATTTGCATT 899038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153794101307826