Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq145 123 2e-23 seq1310 113 4e-20 seq454 93.3 4e-14 >seq145 Length=1338480 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||||||||| || ||||| | || || || ||||| || | || |||||| Sbjct 899038 AATGCAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTC 898979 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| || | | || || || ||||||| || |||||||| ||||| |||||| Sbjct 898978 GGATACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGATCA 898919 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 |||| | | |||| ||||| |||||| |||||||| | ||| | || || ||||| Sbjct 898918 ACAACGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTATAA 898859 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||| ||||| || ||||| |||| |||||| ||||||| | ||||| Sbjct 898858 TATCCAAAAGGAGTCTACCTTACACTTAGTGCTGCGTCTTAGAGGTGG 898811 >seq1310 Length=3030561 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 |||||||| |||||||||||||| |||| || || ||||| || |||| || || Sbjct 644978 AAAATGCAGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCA 645037 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || | | | | || ||| ||||| ||||||||||| | || ||| Sbjct 645038 TCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCAGAT 645097 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||| | | || | || |||||||||||||||||| | ||| || ||||||| Sbjct 645098 CAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGATTAC 645157 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 ||||| ||||| || || || || || || |||||||||||||| ||||| Sbjct 645158 AATATCCAAAAGGAGTCAACCCTTCACTTGGTGTTGCGTCTGCGTGGTGG 645207 >seq454 Length=983520 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||||||||| || ||||| ||||||||||||||||| ||| ||||| || || Sbjct 254447 ATGCAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCT 254388 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || ||||| ||||| ||||| ||||| |||||| Sbjct 254387 GATACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCAA 254328 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 ||| | | || | ||| ||||| || ||||||||| ||| || | || || || Sbjct 254327 CAACGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAAC 254268 Query 111280 ATACAAAAAGAATC 111293 || ||||||||||| Sbjct 254267 ATCCAAAAAGAATC 254254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421801915671856