Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq925 246 3e-60 >seq925 Length=3171676 Score = 246 bits (272), Expect = 3e-60 Identities = 474/691 (69%), Gaps = 6/691 (1%) Strand=Plus/Minus Query 23343 ATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGTTTTAC 23402 ||| ||||| ||||||||||| | |||| | | | | || ||||| ||||| ||||| Sbjct 2021792 ATCGGCTACGAATTCAATATAATCCGACATGAGACTACAATTCATACCAATTAGGTTTAC 2021733 Query 23403 TGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATTTGAAC 23462 || | || || ||||||| || |||||| ||| || || || |||| || Sbjct 2021732 AGGTAATGCGTCTGTTAAGAATTCTTGTTCAATTTTAACTGCTTCAGATATGATTTCAAT 2021673 Query 23463 AATAACTTCTTCACTAGGTGGATATTTTAAATACTTAAACAATAAACATGCAAAATCACA 23522 |||| ||| || ||| | | | |||| | |||| ||||| || |||||||| Sbjct 2021672 AATACGTTCCCTGCTGGGTTTCTGTATCAAATGTTGGAACATCAAACACGCGAAATCACA 2021613 Query 23523 ATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCC 23582 ||||| || || || | ||||| ||||| || |||||||| || |||||||| || Sbjct 2021612 ATGTAAACCCTCGTCACGTGAGATCAACTCATTGGAGAATGTTAAGCCCGGCATTAAACC 2021553 Query 23583 TCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGC 23642 ||||| |||| |||||| |||| ||||| ||| |||||| || || |||||||| Sbjct 2021552 ACGTTTCTTAAGCCAAAAGATTGATGCAAAACTGCCGCTAAAGAATATGCCTTCAACAGC 2021493 Query 23643 CGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGT 23702 ||||| || | | |||| |||||| ||||| | ||||||||| | Sbjct 2021492 GGCAAATGCAATTATACGTTCACCAAAGTTTGCAGACTTTGAAGAAATCCAAGCCAGCGC 2021433 Query 23703 CCAATTAGCCTTCAATTTTACA-CACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGT-T 23760 ||||| |||||| || ||| || | || || |||||||| || || | || ||| | Sbjct 2021432 CCAATCAGCCTTACGCTTAACAGCAGGC-ATCGTCTCAATTGCATTGAACA-AATAGTCT 2021375 Query 23761 TTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATA 23820 ||| || || | |||||||| ||||||| || ||||||||||| || || | | Sbjct 2021374 CTTTGTTTGCCGTCCTTAATATATGTGTCAATTAATATGCTATACATTTCTGAGTGCACA 2021315 Query 23821 TTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTA 23880 ||||| ||||| || ||||| || || ||||| | || || | | |||||| || | | Sbjct 2021314 TTTTCCATAGCGATTTGAAAACCGTAGAAACACCGCGCCTCCGTTACTTGAACTTCTTGA 2021255 Query 23881 AAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGA 23940 || | || | |||||||| || ||||||||||| || ||||| || || | Sbjct 2021254 CTGAAACGTTCTACCAAATTTTCATTTACAATACCATCCGAGGCGGCAAAAAAGGCTAAT 2021195 Query 23941 ACATATTTTATAAAATGTCTTTCATCAGTTGATAA-TTTTTTCCAATCATTAATATCTTT 23999 || | | |||||||||||| | || ||| | | |||||||| | ||| || Sbjct 2021194 ACGTGCGAAACAAAATGTCTTTCGT-TGTCAGTAAGTCGTGCCCAATCATCTAAATCCTT 2021136 Query 24000 TGATAAATCAACTTCATCAACTGTCCAAAAA 24030 |||||||| || || || || ||||||||| Sbjct 2021135 GGATAAATCTACCTCTTCCACGGTCCAAAAA 2021105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521476227408400