Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq454 138 8e-28 seq1310 104 2e-17 seq145 91.5 1e-13 >seq454 Length=983520 Score = 138 bits (152), Expect = 8e-28 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| || || || ||||||||||||||||| Sbjct 254442 TTGCATGCCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTA 254501 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 |||| | || | ||| | || || |||||||| ||||||||||||||||| || |||| Sbjct 254502 GTCGGACAAGGT-GCGTCCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGAT 254560 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGG 44282 ||| ||| | ||||||||| ||| ||||| ||||| | | ||||| || | | Sbjct 254561 CTGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATG 254620 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||| || || || || || || | |||||| |||||||||||||| Sbjct 254621 GTTCAACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675 Score = 125 bits (138), Expect = 5e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 44156 ATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGC 44215 ||||||||||||| | | || | || |||| |||||| || || || ||||||||| Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800 Query 44216 TGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTG 44275 || ||||||| || | |||||| || || ||||| ||||| || | ||||| Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860 Query 44276 TCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335 || | | ||||||||||| ||||| ||||| || || ||||||||||||||||||||| Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920 Query 44336 AT 44337 || Sbjct 255921 AT 255922 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||||||||||||||| |||| | | || | || ||||||||||| || || || Sbjct 253546 TCCTTTTGGATGTTGTAGTCGGATAATGTACGTCCATCTTCCAGCTGCTTACCAGCGAAA 253605 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 ||||||||||| ||||||| ||| | ||||||||| || ||||| ||||| | Sbjct 253606 ATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTC 253665 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | ||||| || | | ||| || |||| || || ||||| ||||| | ||||| ||| Sbjct 253666 TCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTAACG 253725 Query 44327 AAGATTTGCAT 44337 || |||||||| Sbjct 253726 AAAATTTGCAT 253736 Score = 120 bits (132), Expect = 2e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| |||| ||||| || |||||||||||||||||| Sbjct 254670 TTGCATACCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTA 254729 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | ||| |||| ||||| || || |||||||| |||||||| || ||||| Sbjct 254730 GTCAGACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATC 254789 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||||||| || ||||| ||| | | | ||||| || | | Sbjct 254790 TGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGG 254849 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| ||||||| || || || || || || | |||||| |||||||||||||| Sbjct 254850 TTCGACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || |||||||||||||| || | | ||| | || |||| |||||| ||||||||| Sbjct 254257 TCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCAAAG 254316 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| || ||||||| || | ||||||||| || || || ||||| | Sbjct 254317 ATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACATTC 254376 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | ||||| || | | || || |||| || || || || || || | || || ||| Sbjct 254377 TCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTAACG 254436 Query 44327 AAGATTTGCATG 44338 || ||||||||| Sbjct 254437 AAAATTTGCATG 254448 >seq1310 Length=3030561 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | |||||||| |||||| || |||||||||||| ||||||||| Sbjct 645210 ATACCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCG 645151 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | | ||| | || |||| || || ||||| ||||||||||| || ||||||| Sbjct 645150 GACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGT 645091 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | |||||| || || || || || | || | |||||||| | | || Sbjct 645090 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCG 645031 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || || ||||| || || || || || || || || ||||| Sbjct 645030 ACCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981 >seq145 Length=1338480 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| ||||| || | || ||| | ||| | || |||||||||||| || || || || Sbjct 898810 TCCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGC 898869 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 | || | || ||||| || || || || || || ||||| || ||||| | || Sbjct 898870 TAAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGG 898929 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCA-ATGTTCCTATGGTGTCGGCGGATTCCA 44288 | |||||| || || || || ||| | ||| || || || || | || ||| | Sbjct 898930 AATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCG-ATAGTATCCGAGGGTTCGA 898988 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| | || || ||||| ||||||||||| |||||||| |||||||| Sbjct 898989 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982476386302