Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq454 138 8e-28
seq1310 104 2e-17
seq145 91.5 1e-13
>seq454
Length=983520
Score = 138 bits (152), Expect = 8e-28
Identities = 173/235 (74%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | || | ||| |||| || || || |||||||||||||||||
Sbjct 254442 TTGCATGCCACCACGCAAACGCAAGACCAAATGGAGAGTAGATTCCTTTTGGATGTTGTA 254501
Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222
|||| | || | ||| | || || |||||||| ||||||||||||||||| || ||||
Sbjct 254502 GTCGGACAAGGT-GCGTCCATCTTCTAGCTGCTTGCCGGCAAAGATCAAACGTTGTTGAT 254560
Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGG 44282
||| ||| | ||||||||| ||| ||||| ||||| | | ||||| || | |
Sbjct 254561 CTGGAGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCTGATG 254620
Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| ||||||| || || || || || || | |||||| ||||||||||||||
Sbjct 254621 GTTCAACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254675
Score = 125 bits (138), Expect = 5e-24
Identities = 137/182 (75%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 44156 ATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGC 44215
||||||||||||| | | || | || |||| |||||| || || || |||||||||
Sbjct 255741 ATGTTGTAATCGGATAATGTACGTCCATCTTCCAACTGCTTACCAGCGAAAATCAAACGC 255800
Query 44216 TGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTG 44275
|| ||||||| || | |||||| || || ||||| ||||| || | |||||
Sbjct 255801 TGTTGATCTGGGGGAATACCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCGATGGTA 255860
Query 44276 TCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGC 44335
|| | | ||||||||||| ||||| ||||| || || |||||||||||||||||||||
Sbjct 255861 TCAGATGGTTCCACCTCCAGAGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGC 255920
Query 44336 AT 44337
||
Sbjct 255921 AT 255922
Score = 120 bits (132), Expect = 2e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
||||||||||||||||| |||| | | || | || ||||||||||| || || ||
Sbjct 253546 TCCTTTTGGATGTTGTAGTCGGATAATGTACGTCCATCTTCCAGCTGCTTACCAGCGAAA 253605
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
||||||||||| ||||||| ||| | ||||||||| || ||||| ||||| |
Sbjct 253606 ATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTGTCTTGGATCTTGGCCTTCACATTC 253665
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
| ||||| || | | ||| || |||| || || ||||| ||||| | ||||| |||
Sbjct 253666 TCGATGGTATCTGATGGTTCGACTTCCAAGGTGATGGTCTTGCCCGTCAAAGTCTTAACG 253725
Query 44327 AAGATTTGCAT 44337
|| ||||||||
Sbjct 253726 AAAATTTGCAT 253736
Score = 120 bits (132), Expect = 2e-22
Identities = 167/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163
|| ||| || || | || | ||| |||| ||||| || ||||||||||||||||||
Sbjct 254670 TTGCATACCACCGCGCAAACGCAATACCAAATGAAGGGTAGACTCCTTTTGGATGTTGTA 254729
Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223
|| | | ||| |||| ||||| || || |||||||| |||||||| || |||||
Sbjct 254730 GTCAGACAAAGTGCGTCCGTCTTCCAGTTGTTTGCCGGCAAAAATCAAACGTTGTTGATC 254789
Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283
|| || | ||||||||| || ||||| ||| | | | ||||| || | |
Sbjct 254790 TGGGGGAATACCTTCCTTATCTTGGATCTTGGCCTTGACATTCTCGATGGTATCTGATGG 254849
Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||| ||||||| || || || || || || | |||||| ||||||||||||||
Sbjct 254850 TTCGACCTCCAAAGTGATGGTTTTGCCGGTCAAGGTCTTAACGAAGATTTGCAT 254903
Score = 89.7 bits (98), Expect = 4e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
|| |||||||||||||| || | | ||| | || |||| |||||| |||||||||
Sbjct 254257 TCTTTTTGGATGTTGTAGTCAGACAAAGTGCGTCCATCTTCCAACTGCTTGCCGGCAAAG 254316
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266
|||||||| || ||||||| || | ||||||||| || || || ||||| |
Sbjct 254317 ATCAAACGTTGTTGATCTGGGGGAATACCTTCCTTGTCTTGGATTTTAGCCTTCACATTC 254376
Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326
| ||||| || | | || || |||| || || || || || || | || || |||
Sbjct 254377 TCAATGGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTGCCGGTCAAAGTTTTAACG 254436
Query 44327 AAGATTTGCATG 44338
|| |||||||||
Sbjct 254437 AAAATTTGCATG 254448
>seq1310
Length=3030561
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || || | ||| | |||||||| |||||| || |||||||||||| |||||||||
Sbjct 645210 ATACCACCACGCAGACGCAACACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCG 645151
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
| | ||| | || |||| || || ||||| ||||||||||| || |||||||
Sbjct 645150 GACAAAGTGCGACCATCTTCCAATTGTTTGCCGGCGAAGATCAAACGTTGTTGATCTGGT 645091
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287
|| | |||||| || || || || || | || | |||||||| | | ||
Sbjct 645090 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATGGTGTCAGATGGCTCG 645031
Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||| || || ||||| || || || || || || || || |||||
Sbjct 645030 ACCTCCAAAGTGATGGTCTTACCAGTCAGTGTTTTGACAAAAATCTGCAT 644981
>seq145
Length=1338480
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169
||| ||||| || | || ||| | ||| | || |||||||||||| || || || ||
Sbjct 898810 TCCACCTCTAAGACGCAGCACTAAGTGTAAGGTAGACTCCTTTTGGATATTATAGTCAGC 898869
Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229
| || | || ||||| || || || || || || ||||| || ||||| | ||
Sbjct 898870 TAAAGTACGACCATCTTCCAGTTGTTTTCCCGCGAAAATTAAACGTTGTTGATCGGGGGG 898929
Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCA-ATGTTCCTATGGTGTCGGCGGATTCCA 44288
| |||||| || || || || ||| | ||| || || || || | || ||| |
Sbjct 898930 AATACCTTCTTTATCTTGAATTTTTGCCTTAACATGCTCG-ATAGTATCCGAGGGTTCGA 898988
Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| | || || ||||| ||||||||||| |||||||| ||||||||
Sbjct 898989 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTCACGAAAATTTGCAT 899037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359982476386302
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |