Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq969 116 5e-21 seq1113 96.9 5e-15 >seq969 Length=5813909 Score = 116 bits (128), Expect = 5e-21 Identities = 263/393 (67%), Gaps = 2/393 (1%) Strand=Plus/Minus Query 50473 AAGGAGATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAA 50532 |||| ||||| || ||||||||||||||||| ||| | |||||||| || ||| | Sbjct 2585877 AAGGCGATTTGGGGCCTGTTTACGGTTTTCAGTGGCGTCATTTTGGTGCCAAATACCGTA 2585818 Query 50533 ATTGCGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGT 50592 ||| | | ||||||| | ||| ||||| | |||||||| ||| || | || || Sbjct 2585817 CTTGTAAGGAAAATTACAAGGGTGAAGGCATAGATCAACTTCAACAAGTAATTGACACTA 2585758 Query 50593 TGAAAACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAG 50652 | |||| ||||| | || || | || ||||| | || |||||||| ||||| Sbjct 2585757 TCAAAAACAACCCTAATGACCGAAGAATAATAATGTCTGCATGGAATCCCGTTGATATCC 2585698 Query 50653 ATCAAACCGTTTTACCTCCGTGTCA-TGTTTTATGTCAATTTTATGCCACAGACAATGTT 50711 ||| | ||||| || ||||| ||| || | ||||||| | || || | Sbjct 2585697 CAGAAATGGCGTTACCACCTTGTCATTGTCTTGCG-CAATTTTTCGTTGCAAACGGAGAG 2585639 Query 50712 TTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTA 50771 | |||||||||| || ||| | || |||||||| || ||||| || |||||| | Sbjct 2585638 CTGTCCTGTCAATTGTACCAACGTAGCGCCGATATGGGATTGGGCGTACCGTTCAACATT 2585579 Query 50772 GCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAGAA 50831 ||||| || ||||| | || || |||| || || || | || || || Sbjct 2585578 GCTTCGTATTCTTTACTTACCTACATGATTGCACATATAACTAATCTTCGTCCAGGTGAC 2585519 Query 50832 TTTATTCATACGTTAGGAGACGCTCATATTTAC 50864 || | ||||| | |||||||||||||| ||| Sbjct 2585518 TTCGTGCATACTCTTGGAGACGCTCATATCTAC 2585486 >seq1113 Length=4038739 Score = 96.9 bits (106), Expect = 5e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 || ||||| || | ||| || | ||||| || || | ||| || || | || |||||| Sbjct 207624 TTCAAAATCTGCACACGACCTTCTTCATTCGGCAAACTAATCTCCATTTGCACTTCCAAG 207683 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 || || |||| || || || || ||||| | || ||| || |||||||| || | Sbjct 207684 CGTCCGGGTCGCAACAAAGCCTCATCAATCATATCACGTCGATTTGTCATACCAATAACC 207743 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCG 156050 || |||||||| || || ||||| || ||||| | ||| ||||||||||| || | | Sbjct 207744 AATATGTTGTTCAACTGCTCGACACCATCGATTTTGGCCAACAATTGATTGACCACAGTG 207803 Query 156051 TCGTGC 156056 |||||| Sbjct 207804 TCGTGC 207809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667060140777360