Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21]
1,806 sequences; 479,047,742 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq454 143 6e-29
seq145 138 3e-27
seq1310 132 1e-25
>seq454
Length=983520
Score = 143 bits (158), Expect = 6e-29
Identities = 160/211 (76%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || | || || ||||| ||||| | ||||| ||| |||||
Sbjct 254672 CAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCAGAT 254613
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || || ||||| |||||||| ||||| || ||||| || || |||
Sbjct 254612 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAACAA 254553
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | ||||| ||||| || ||||| ||||||||| | || |||| |||| || ||| |
Sbjct 254552 CGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCAC-CTTGTCCGACTACAACAT 254494
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTG 178133
|||||| ||||| || || ||| | || |||
Sbjct 254493 CCAAAAGGAATCTACTCTCCATTTGGTCTTG 254463
Score = 132 bits (146), Expect = 1e-25
Identities = 150/201 (75%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||| | || || || || |||||| | || || ||| |||||
Sbjct 253733 CAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCAGAT 253674
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| || || ||||| || ||||| ||||| |||||||| || || ||
Sbjct 253673 ACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAACAG 253614
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || ||||| || || ||||| ||||||||| | || | |||| || ||| ||
Sbjct 253613 CGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACAACATC 253554
Query 178104 CAAAAAGAATCAACACTGCAT 178124
||||| ||||| || || |||
Sbjct 253553 CAAAAGGAATCTACCCTCCAT 253533
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| |||||| | || || ||||| |||||| | || || || || ||
Sbjct 254444 CAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCTGAT 254385
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| ||||| || || || || || ||||| ||||| || || || || || |||
Sbjct 254384 ACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCAACAA 254325
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| ||||| || ||| | ||||||||| | ||| | | || || ||| ||
Sbjct 254324 CGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAACATC 254265
Query 178104 CAAAAAGAATC 178114
|||||||||||
Sbjct 254264 CAAAAAGAATC 254254
Score = 118 bits (130), Expect = 3e-21
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || | || || ||||| ||||| | ||||| ||| |||||
Sbjct 254900 CAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCAGAT 254841
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| ||||| ||||| || || || ||||| || || || || || |||
Sbjct 254840 ACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAACAA 254781
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || ||||| ||||| || ||||| ||| | ||| | | || || ||| ||
Sbjct 254780 CGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATC 254721
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133
||||| || || || || ||| | || |||
Sbjct 254720 CAAAAGGAGTCTACCCTTCATTTGGTATTG 254691
Score = 104 bits (114), Expect = 6e-17
Identities = 129/177 (73%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| || || || || || || || || || ||||||||| || ||
Sbjct 255919 CAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCATCTGAT 255860
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || || || ||||| || ||||||||||| || || || || || ||
Sbjct 255859 ACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAACAG 255800
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| | || ||||| || || ||| | ||||||||| | || | ||||||| |||
Sbjct 255799 CGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCCGATTACAAC 255743
>seq145
Length=1338480
Score = 138 bits (152), Expect = 3e-27
Identities = 147/194 (76%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||||||||| ||||| || || || ||||| || ||||| ||| ||| ||
Sbjct 899034 CAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCGGAT 898975
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| |||||| | || || ||| ||||| || |||||||| || || || || || |||
Sbjct 898974 ACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGATCAACAA 898915
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || ||||| |||||||| || |||||||| | ||| | || || ||||| ||
Sbjct 898914 CGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTATAATATC 898855
Query 178104 CAAAAAGAATCAAC 178117
||||| || || ||
Sbjct 898854 CAAAAGGAGTCTAC 898841
>seq1310
Length=3030561
Score = 132 bits (146), Expect = 1e-25
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | ||||| || ||||| || || || || || ||||| | ||||| ||
Sbjct 644978 AAAATGC---AGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAG 645034
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| ||||||||||| || |||||| || || || ||||||||||| ||||| ||
Sbjct 645035 CCATCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCA 645094
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| || ||||| | ||||||||||| ||||| | |||||||| | ||| | |||||
Sbjct 645095 GATCAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGAT 645154
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
|| || ||||||| || ||||| || || ||||
Sbjct 645155 TACAATATCCAAAAGGAGTCAACCCTTCA-CTTG 645187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203703346412364
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |