Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratitis_20capitata_20[refseq_20GCF_5F000347755.2_202013-03-21] 1,806 sequences; 479,047,742 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq454 143 6e-29 seq145 138 3e-27 seq1310 132 1e-25 >seq454 Length=983520 Score = 143 bits (158), Expect = 6e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || ||||| ||||| | ||||| ||| ||||| Sbjct 254672 CAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTTGAACCATCAGAT 254613 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| |||||||| ||||| || ||||| || || ||| Sbjct 254612 ACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCTCCAGATCAACAA 254553 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| ||||| || ||||| ||||||||| | || |||| |||| || ||| | Sbjct 254552 CGTTTGATCTTTGCCGGCAAGCAGCTAGAAGATGGACGCAC-CTTGTCCGACTACAACAT 254494 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||| ||||| || || ||| | || ||| Sbjct 254493 CCAAAAGGAATCTACTCTCCATTTGGTCTTG 254463 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || |||||| | || || ||| ||||| Sbjct 253733 CAAATTTTCGTTAAGACTTTGACGGGCAAGACCATCACCTTGGAAGTCGAACCATCAGAT 253674 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||||| || ||||| ||||| |||||||| || || || Sbjct 253673 ACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGATCAACAG 253614 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || ||||| ||||||||| | || | |||| || ||| || Sbjct 253613 CGTTTGATTTTCGCTGGTAAGCAGCTGGAAGATGGACGTACATTATCCGACTACAACATC 253554 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| ||||| || || ||| Sbjct 253553 CAAAAGGAATCTACCCTCCAT 253533 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||| | || || ||||| |||||| | || || || || || Sbjct 254444 CAAATTTTCGTTAAAACTTTGACCGGCAAAACCATCACCTTGGAAGTTGAGCCATCTGAT 254385 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| || || || || || ||||| ||||| || || || || || ||| Sbjct 254384 ACCATTGAGAATGTGAAGGCTAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCAACAA 254325 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || ||| | ||||||||| | ||| | | || || ||| || Sbjct 254324 CGTTTGATCTTTGCCGGCAAGCAGTTGGAAGATGGACGCACTTTGTCTGACTACAACATC 254265 Query 178104 CAAAAAGAATC 178114 ||||||||||| Sbjct 254264 CAAAAAGAATC 254254 Score = 118 bits (130), Expect = 3e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || ||||| ||||| | ||||| ||| ||||| Sbjct 254900 CAAATCTTCGTTAAGACCTTGACCGGCAAAACCATCACTTTGGAGGTCGAACCATCAGAT 254841 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| || || || ||||| || || || || || ||| Sbjct 254840 ACCATCGAGAATGTCAAGGCCAAGATCCAAGATAAGGAAGGTATTCCCCCAGATCAACAA 254781 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||| || ||||| ||| | ||| | | || || ||| || Sbjct 254780 CGTTTGATTTTTGCCGGCAAACAACTGGAAGACGGACGCACTTTGTCTGACTACAACATC 254721 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||| || || || || ||| | || ||| Sbjct 254720 CAAAAGGAGTCTACCCTTCATTTGGTATTG 254691 Score = 104 bits (114), Expect = 6e-17 Identities = 129/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || || || || || || || || || ||||||||| || || Sbjct 255919 CAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACTCTGGAGGTGGAACCATCTGAT 255860 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || || || ||||| || ||||||||||| || || || || || || Sbjct 255859 ACCATCGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGTATTCCCCCAGATCAACAG 255800 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| || || ||| | ||||||||| | || | ||||||| ||| Sbjct 255799 CGTTTGATTTTCGCTGGTAAGCAGTTGGAAGATGGACGTACATTATCCGATTACAAC 255743 >seq145 Length=1338480 Score = 138 bits (152), Expect = 3e-27 Identities = 147/194 (76%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| ||||| || || || ||||| || ||||| ||| ||| || Sbjct 899034 CAAATTTTCGTGAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCCTCGGAT 898975 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||| | || || ||| ||||| || |||||||| || || || || || ||| Sbjct 898974 ACTATCGAGCATGTTAAGGCAAAAATTCAAGATAAAGAAGGTATTCCCCCCGATCAACAA 898915 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| |||||||| || |||||||| | ||| | || || ||||| || Sbjct 898914 CGTTTAATTTTCGCGGGAAAACAACTGGAAGATGGTCGTACTTTAGCTGACTATAATATC 898855 Query 178104 CAAAAAGAATCAAC 178117 ||||| || || || Sbjct 898854 CAAAAGGAGTCTAC 898841 >seq1310 Length=3030561 Score = 132 bits (146), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | ||||| || ||||| || || || || || ||||| | ||||| || Sbjct 644978 AAAATGC---AGATTTTTGTCAAAACACTGACTGGTAAGACCATCACTTTGGAGGTCGAG 645034 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||||||||| || |||||| || || || ||||||||||| ||||| || Sbjct 645035 CCATCTGACACCATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCACCA 645094 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || || ||||| | ||||||||||| ||||| | |||||||| | ||| | ||||| Sbjct 645095 GATCAACAACGTTTGATCTTCGCCGGCAAACAATTGGAAGATGGTCGCACTTTGTCCGAT 645154 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || ||||||| || ||||| || || |||| Sbjct 645155 TACAATATCCAAAAGGAGTCAACCCTTCA-CTTG 645187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203703346412364