Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq13 104 2e-17 >seq13 Length=8037603 Score = 104 bits (114), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 18879 GATCAGCTG-CAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGAT 18937 ||||||||| | || |||||||| | |||||||| ||||| | | | ||||| || Sbjct 7609530 GATCAGCTGGCGGAC-GTTATAGACAAAATTAAAAACAACCCCAATGACAGGCGAATCAT 7609588 Query 18938 TATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTT 18997 ||| ||||||||||||| ||||| || | |||| || || || ||||| || | Sbjct 7609589 TATGAGTTCTTGGAATCCAATAGATATACCGATGATGGCTCTCCCACCCTGTCATTCGCT 7609648 Query 18998 ATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGA 19057 | || || ||||| ||||| |||||||| || || | || || || | || || Sbjct 7609649 CTCGCAATTCTACGTGTGTAACGGCGAATTATCTTGTCATCTTTATCAAAGGGCAGGTGA 7609708 Query 19058 TATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACAT 19111 |||||| | || || || ||||| |||||| ||||| || ||||| | ||| Sbjct 7609709 TATGGGATTGGGAGTTCCTTTCAATATTGCTTCGTATGCCCTACTTACTTGCAT 7609762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399492036977565