Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq13 152 4e-32 >seq13 Length=8037603 Score = 152 bits (168), Expect = 4e-32 Identities = 188/257 (73%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 101746 TAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGG 101805 || ||| || | ||||||||||||| | || || | |||||| ||||||||||||||| Sbjct 7579950 TAAATTTGTTATATGAGCAATCATGTATGTCAATAAAGAATAAGAAGCAATGTTAAATGG 7580009 Query 101806 CACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACA 101865 ||| || | || ||||| || |||||| || |||||||| ||||| | ||||| Sbjct 7580010 CACACCGAGACCTATATCGGCGCTTCTTTGGTAAAGTTGACAAGAAAGTTCACCATCGGC 7580069 Query 101866 GACATAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAAC 101925 |||||||||||| | | ||||||||| || | ||||||| |||||||| Sbjct 7580070 TACATAAAATTGAACAAGAATATGACAAGGAGGAAGAGCCATTTTTGGAATGTCAATTGG 7580129 Query 101926 ATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAA 101985 ||||||||||||||||| || | ||||| ||| | ||| ||| ||||||| | Sbjct 7580130 ATTCCAAGCACACATTATTATTCGCCTATCATCAGGTGTGCTTTGTATTTTATCAATTAC 7580189 Query 101986 CTGTTTTAATTGGTCAA 102002 | ||||||||| |||| Sbjct 7580190 ATCTTTTAATTGATCAA 7580206 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 102038 TATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCT 102097 |||| ||| || |||| ||||| ||||| ||||| | || || | ||||||||| ||| Sbjct 7607608 TATTTTGCACCATAATGTCTCCATTGAAAGCCATAAATCGGGCCTAAATCTCCTTCGTCT 7607549 Query 102098 CTGTC-ATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTG 102156 || || || ||| |||| | || | ||| ||||||| |||| ||||||||||| | Sbjct 7607548 CTATCGATGAAACCCAA-TGAGTCGAGAAACTTTCTAGATGCATTGGCATCCCAAATTTT 7607490 Query 102157 CACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTC 102216 || || | ||||| ||||| || ||| || |||||||||||||||| || ||| Sbjct 7607489 GACACCTTTATCGGATAGTTCTTTCGCGTTAGTGGAGCCTCTGATAAACCACAGCAATTC 7607430 Query 102217 TTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAAT 102265 |||||||| | | ||||||||||| || || || | | ||||||| Sbjct 7607429 CTCAACAACTGCACGCCAAAATACTCGTTTTGTTGTGAGTAATGGAAAT 7607381 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 102036 TATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCAT 102095 |||||| |||||| || || ||||| ||||| ||||||||||| || | |||||| || | Sbjct 7580623 TATATTTTGCTCCAAAGTGTCTCCATTGAAAGCCATACACAGGGCCTAAATCTCCCTCTT 7580682 Query 102096 CTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGT 102155 ||| || || | | ||| |||||| | || | ||| ||||||||||||| Sbjct 7580683 CTCGATCGGTGAATTTACATAAATCCAAAAATTCACGTGAACTATTAGCATCCCAAATGT 7580742 Query 102156 GCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTT 102215 | || | | | |||| ||||| | || || ||||| || ||||| | | || Sbjct 7580743 GTACATCTTTTTCAGATAATTCTTTTGCATTTGTTGAACCTCTAATGAACCAAAGTAATT 7580802 Query 102216 CTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAAT 102265 | || || || || | ||||||||| | || || || || | ||||||| Sbjct 7580803 CCTCGACCACTCCCCGCCAAAATACACGTTTGGTTGTCAATAATGGAAAT 7580852 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| || ||||||||||||||||| | || | ||| |||||| || || || ||||| Sbjct 7609778 AGTCACGTGAGCAATCATGCAAGTAAGTAGGGCATACGAAGCAATATTGAAAGGAACTCC 7609719 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 || ||||||||| ||| |||||||| || ||||| || | | || | ||| || || Sbjct 7609718 CAATCCCATATCACCTGCCCTTTGATAAAGATGACAAGATAATTCGCCGTTACACACGTA 7609659 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCA 101931 ||||| | |||||| || || | |||| | || || ||| |||||| Sbjct 7609658 GAATTGCGAGAGCGAATGACAGGGTGGGAGAGCCATCATCGGTATATCTATTGGATTCCA 7609599 Query 101932 AGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTA 101972 || || ||| | || | || || | ||| ||||||||| Sbjct 7609598 AGAACTCATAATGATTCGCCTGTC-ATTGGGGTTGTTTTTA 7609559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361240382445707