Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq2164 242 3e-60 seq89 116 3e-22 >seq2164 Length=227 Score = 242 bits (268), Expect = 3e-60 Identities = 167/189 (88%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 3049 CTAAGCGGAACGATATGTTCCTCTTTCATCTTCATGCCTCGGTACGAATAACGCACACCT 3108 ||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| ||| Sbjct 189 CTAAGCGGAACAATATGCTCCTCTTTCATCTTCATGCCACGGTACGAGTAACGCACGCCT 130 Query 3109 TTAATTTCTTCTCGCTTTGCAGGTATACGCCAAAGAGATTTATCGAAGTCGAATTCATCC 3168 |||||||||||||| ||||| |||| ||||| ||||||||||| |||||||| |||| | Sbjct 129 TTAATTTCTTCTCGTTTTGCTGGTACGCGCCAGAGAGATTTATCAAAGTCGAACTCATTC 70 Query 3169 CAACGTGCGAAACGTAATTCACTGGAACGCACAAAAGTTAGCAAGGAAAGCTTGACCGCA 3228 ||||| ||||| ||||| |||||||| ||||| |||||||| |||||||||| ||| || Sbjct 69 CAACGCGCGAAGCGTAACTCACTGGAGCGCACGAAAGTTAGTAAGGAAAGCTCGACTGCG 10 Query 3229 ATCCGTGTC 3237 ||||||||| Sbjct 9 ATCCGTGTC 1 >seq89 Length=7458 Score = 116 bits (128), Expect = 3e-22 Identities = 178/250 (71%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 2710 TCCAAATAATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGCTCGGAGGTA 2769 |||||||||||||||||||| || | ||| | | || | | ||| | | | || Sbjct 6802 TCCAAATAATCAGCCCACCATTGAAGCATAAGCCTGCGTTGCGTAATATGTT--GTGCTA 6859 Query 2770 TG-GA-TATATGCCGCACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTCTCTATCG 2827 || || |||| || || || |||||||| |||| |||||||| ||| || ||||| | Sbjct 6860 TGTGAGTATAAGCAGCTCGGACATTATTTTGCTCCTTGTGGCTCATTTGTCTTTCTATAG 6919 Query 2828 CGTCATCACTCCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCCAT 2887 |||| || |||||| || ||||| |||| | || || ||||| || | || |||| Sbjct 6920 CGTCCTCTGTCCATATTCCAGACTCTACCAATGAACTACAAGCCATTGTACGGAAACCAT 6979 Query 2888 GCCCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTTACCGTGT 2947 ||||||| | | |||| ||||||||| |||||| ||||| || | || | || | Sbjct 6980 GCCCACAAATTTGAGTTTGAGTATCATACCCCATCTGACGCAGGGCTTTATTAATGGTAT 7039 Query 2948 TTTCACTCAT 2957 |||| ||||| Sbjct 7040 TTTCGCTCAT 7049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37080575018224