Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq8 138 1e-27 >seq8 Length=10932247 Score = 138 bits (152), Expect = 1e-27 Identities = 237/343 (69%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 53550 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 53609 |||| || || | |||||| || || | ||||||||| ||| ||||||||||||| Sbjct 3799590 TACCAATTGGACGATGTCTGAAGTTCGATCTCTCAGCTTCTTTAATTGGATAATAATTAA 3799531 Query 53610 TATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 53669 ||| ||||| |||| | ||| | || |||||| || || |||| ||| ||| Sbjct 3799530 GATCAATAATCTTATCTAAATTTTGGGTAACAACTTTGGTAACTTCTTTCAATTTTTGAA 3799471 Query 53670 AATCAAA---TTGTCCATCTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTAC 53723 | ||| | || | || | | |||||||| || | || |||||||| | ||||| Sbjct 3799470 AGTCATACGTTTTTTTATTGACATTAACAAACATATTAACAGCGATAGATGCTAAATTAC 3799411 Query 53724 AAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 53783 | || || || |||| | | | |||||| | | || || || |||||||||| Sbjct 3799410 ACACCGCCACTTCATCTGGAGAAGAATATTGCACAACTTCGGTACATAGATTACTACTTC 3799351 Query 53784 TGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGA 53843 ||||||| || | ||| | |||||| ||| ||||||| ||| |||||||| ||| Sbjct 3799350 TGATGGTACCAAGATTCTTTTGATTTGACTTCCTGTTACAATGATCTTTATAAAGCATGT 3799291 Query 53844 ATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCA 53886 | || ||||||||||||| || || | || ||| || |||| Sbjct 3799290 AAGGAGTACCAGTTTCAACTTGCGACTTTAAAATTGCAGTCCA 3799248 Score = 134 bits (148), Expect = 2e-26 Identities = 219/313 (70%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 54095 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 54154 || |||||||| || || ||||| || || | | ||||||| ||||||||||||||| Sbjct 3798658 TTACCTGTATTTTTCTTTAGATCAAGAAATTCAAATATATCAGCATGCCACGGTTCCAAA 3798599 Query 54155 TATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 54214 || |||| | | ||||| | || ||||| || ||||| | |||| || || ||| Sbjct 3798598 TACATGGCAAATGCCCCAGGTCTCTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 3798539 Query 54215 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA-TATA 54273 ||||||||||| | ||| |||| | ||||| ||| ||||| || || | || | || Sbjct 3798538 TTATAAACTCTTATCATAGGAACTAAGCCATTCGATATTCCATTTGTGCCAGCGATTCTA 3798479 Query 54274 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGAT 54333 | | || | || | |||| || || | ||| || || ||||| |||| | Sbjct 3798478 G-TACCTTTTGCTCTAATAGTATGAACACTCAAACCAATGCCACCTGCAGATTTACTAAC 3798420 Query 54334 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 54393 |||||| |||| |||||| |||||||| || || || || ||||| || |||| | || Sbjct 3798419 TAATGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGTTAG 3798360 Query 54394 TAGAAAACAGCTA 54406 || || || ||| Sbjct 3798359 AAGGAAGCAACTA 3798347 Score = 129 bits (142), Expect = 7e-25 Identities = 179/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 53078 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 53137 ||||| ||| || || || |||| ||| | ||||| ||||| ||| || | | | | Sbjct 3800453 ATAATTTCATTTTTCATTTCTTCATCCCAAATATTTCTTTCGGTCAAATCTTTTAATAAA 3800394 Query 53138 TGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 53197 || |||||||| || ||||||||||| || | || | | || || |||||||| || Sbjct 3800393 TGAGGATTAACAACCTGAAATTCTCCCGAAAGAACGCGTCTTGTATAGATATTACTCGTG 3800334 Query 53198 TACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 53257 || ||||| | ||| |||||||| || | |||||||| || || || || ||||| || Sbjct 3800333 TAAGGTTCGATAGATTCATTATTCCCAAGTATTTGAGCTGTAGAAGCTGTTGGCATTGGA 3800274 Query 53258 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAA 53317 || | ||||| || | | ||| | | || ||||||||||||| || |||| Sbjct 3800273 GCAAGTAATAATGAGTTACGGATACCATCTTTTGCTATTTTATCTTTTAAAGCACTCCAA 3800214 Query 53318 TTCCAAAGATC 53328 ||||||||||| Sbjct 3800213 TTCCAAAGATC 3800203 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 54527 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGC 54586 || || || | ||| | ||| |||||||| |||||||| | || || ||||| | Sbjct 3798079 ACCGCAACTCTCATAAGCATATGCTGAGGCCTTTCAACTACTTTTCCATTAATTTTTAAT 3798020 Query 54587 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 54646 ||||| | ||||||| |||||||| |||||||| || || ||| |||| |||||| Sbjct 3798019 AAGTAACTTCTTTCCAATGTTTTAAATCCAAAATAATTATAACCAAAATCTCTATCGTAA 3797960 Query 54647 ATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 ||||| | || || | |||||| || | ||| Sbjct 3797959 ATAATGGCAGAATTAATTTTATCTTTGTGTTT 3797928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593703365325360