Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 8e-16 >seq2 Length=17806784 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25023 AATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAA 25082 |||||| | || ||||| || ||| | ||||| ||||| || ||||| ||||| || Sbjct 3491829 AATAGTTTCAAGATGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAG 3491888 Query 25083 ACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTG 25142 || | |||| || | | || | || ||||| ||||||||||| | Sbjct 3491889 GTAGAGGCATCAGACACCATTGAGAATGTTAAAGCCAAAATCCAGGATAAAGAAGGAATT 3491948 Query 25143 CCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATG 25202 ||| |||||| ||| | || |||||||| || |||||||| |||||| | ||| | Sbjct 3491949 CCCCCAGATCAGCAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTT 3492008 Query 25203 GCCGATTACAATATTCAAAAGGAATCTAC 25231 | ||||||||||||||||||||||| || Sbjct 3492009 TCAGATTACAATATTCAAAAGGAATCAAC 3492037 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25023 AATAGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAA 25082 |||||| | || ||||| || ||| | ||||| ||||| || ||||| ||||| || Sbjct 3492944 AATAGTTTCAAGATGCAGATTTTCGTTAAAACCTTGACTGGTAAAACTATTACTCTTGAG 3493003 Query 25083 ACGGAACCCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTG 25142 || | |||| || | | || | || ||||| ||||||||||| | Sbjct 3493004 GTAGAGGCATCAGACACCATTGAGAATGTTAAAGCCAAAATCCAGGATAAAGAAGGAATT 3493063 Query 25143 CCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATG 25202 ||| |||||| ||| | || |||||||| || |||||||| |||||| | ||| | Sbjct 3493064 CCCCCAGATCAGCAACGTCTAATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACACTT 3493123 Query 25203 GCCGATTACAATATTCAAAAGGAATCTAC 25231 | ||||||||||||||||||||||| || Sbjct 3493124 TCAGATTACAATATTCAAAAGGAATCAAC 3493152 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || ||||||||||||| || ||||| ||||| ||| ||| | | Sbjct 3493183 AATGCAAATTTTTGTCAAAACATTGACAGGTAAAACTATTACACTGGAAGTTGAAGCTTC 3493242 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | || |||||| ||||||||||| | || |||||| Sbjct 3493243 CGATACTATTGAAAATGTGAAAGCTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 3493302 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | || || ||||| || ||||||||||||||| | ||| | |||| || || Sbjct 3493303 GCAACGTCTCATTTTTGCCGGTAAACAATTGGAAGATGGAAGAACATTATCCGACTATAA 3493362 Query 25214 TATTCAAAAGGAATCTACTCTTCA 25237 || ||||| ||||| || || || Sbjct 3493363 CATCCAAAAAGAATCAACGCTCCA 3493386 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| | || ||||| || |||||||| ||||| ||| ||| | | Sbjct 12207177 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207118 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || ||| ||||||||||| | ||| ||| || Sbjct 12207117 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGATAAAGAAGGCATTCCCCCAGACCAG 12207058 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || | || |||||||| ||||| ||| | || ||| ||| | | || |||||| Sbjct 12207057 CAGCGTCTGATCTTTGCTGGCAAGCAACTCGAGGATGGACGTACTTTATCTGACTACAAT 12206998 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || |||||||| ||||| |||||| | ||| | || || |||| || Sbjct 12206997 ATCCAAAAGGAGTCTACGCTTCACTTAGTGCTTCGTTTGAGAGGTGG 12206951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410784498818198