Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 123 3e-23 seq2 118 1e-21 >seq3 Length=17417032 Score = 123 bits (136), Expect = 3e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 116710 CGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTT 116769 ||| ||| | | || ||||| || ||| ||||| ||| ||||| || || || || Sbjct 7877982 CGATTGGCAACAATTAAACGAGAAAGAGAAGCATTTTATCTCCCACGTTCTTGCTTTCTT 7878041 Query 116770 CGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCA 116829 |||||| ||| || || || || |||||||| |||||||| ||| ||||| || || Sbjct 7878042 CGCCGCATCCGATGGTATTGTGAATGAGAATCTCGTCGAGCGCTTCAGCCAGGAAGTCCA 7878101 Query 116830 GGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGA 116889 | | | ||||| || |||||||| ||||| || | || ||||| || || || || || Sbjct 7878102 GATCACAGAGGCTCGATGCTTCTATGGCTTCCAAGTGGCGATGGAAAATGTTCATTCCGA 7878161 Query 116890 AATGTATTCGACCCTCATCGACACGTAC 116917 ||||||||| ||||||||||| ||| Sbjct 7878162 AATGTATTCCCTACTCATCGACACTTAC 7878189 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || ||||||||||| || |||| ||||| | || || | ||||| || |||| Sbjct 7878325 TTCAACGCCATCGAAACACTGCCCTGCGTAGCTAAAAAAGCTAATTGGGCTTTGAACTGG 7878384 Query 117008 ATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGG 117066 || | | ||||| || | || | ||||||| | | ||||| || || |||||||| Sbjct 7878385 ATTAACCAC-GAGAGTGCTACGTTTGCCGAGCGCGTAATTGCCTTTGCTGCGGTCGAGGG 7878443 Query 117067 CGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCC 117126 ||||||| ||||||||||| |||||||| ||||| || || | || || ||||| Sbjct 7878444 AATCTTCTTCAGTGGCAGTTTCGCTGCCATATTCTGGCTGAAAAAGAGAGGACTAATGCC 7878503 Query 117127 CGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 || ||||| ||||| || || || || || ||||||| Sbjct 7878504 TGGACTGACATTCAGTAATGAACTGATTTCGCGGGACGA 7878542 >seq2 Length=17806784 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||| || || | || |||||||| | Sbjct 12207405 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207346 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || |||| |||||||| ||||| ||| | |||||| Sbjct 12207345 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207286 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || || |||| || | || || || ||||||||| Sbjct 12207285 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207226 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || ||| | || |||| |||| || ||| Sbjct 12207225 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGGC 12207178 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||| || || | || |||||||| | Sbjct 12207861 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207802 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || |||| |||||||| ||||| ||| | |||||| Sbjct 12207801 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207742 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || || |||| || | || || || ||||||||| Sbjct 12207741 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207682 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || ||| | || |||| |||| || ||| Sbjct 12207681 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGCGACTGAGAGGAGGC 12207634 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||| || || | || |||||||| | Sbjct 12207633 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12207574 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || |||| |||||||| ||||| ||| | |||||| Sbjct 12207573 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207514 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || || |||| || | || || || ||||||||| Sbjct 12207513 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207454 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || ||| | || || | |||| || ||| Sbjct 12207453 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12207406 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||| || || | || |||||||| | Sbjct 12208089 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208030 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || |||| |||||||| ||||| ||| | |||||| Sbjct 12208029 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12207970 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || || |||| || | || || || ||||||||| Sbjct 12207969 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12207910 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || ||| | || || | |||| || ||| Sbjct 12207909 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12207862 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||| || || | || |||||||| | Sbjct 12208317 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208258 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || |||| |||||||| ||||| ||| | |||||| Sbjct 12208257 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208198 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || || |||| || | || || || ||||||||| Sbjct 12208197 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208138 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || ||| | || || | |||| || ||| Sbjct 12208137 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12208090 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||| || || | || |||||||| | Sbjct 12208545 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208486 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || |||| |||||||| ||||| ||| | |||||| Sbjct 12208485 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208426 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || || |||| || | || || || ||||||||| Sbjct 12208425 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208366 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || ||| | || || | |||| || ||| Sbjct 12208365 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12208318 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||| || || | || |||||||| | Sbjct 12208773 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208714 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || |||| |||||||| ||||| ||| | |||||| Sbjct 12208713 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208654 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || || |||| || | || || || ||||||||| Sbjct 12208653 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208594 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || ||| | || || | |||| || ||| Sbjct 12208593 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12208546 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || |||||||| || || | || |||||||| | Sbjct 12209001 ATGCAAATTTTCGTTAAGACATTAACAGGCAAAACAATTACTCTTGAAGTCGAAGCTTCG 12208942 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || |||| |||||||| ||||| ||| | |||||| Sbjct 12208941 GACACAATAGAAAATGTCAAGGCTAAGATTCAGGACAAAGAAGGCATTCCCCCTGACCAG 12208882 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || || |||| || | || || || ||||||||| Sbjct 12208881 CAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGACTACAAT 12208822 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| | || || ||| | || || | |||| || ||| Sbjct 12208821 ATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12208774 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 40685 GAAAA--ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 40742 ||||| ||||| || || ||||| || | || || || || || || | || ||||| Sbjct 12209236 GAAAATCATGCAGATCTTTGTAAAGACATTGACTGGGAAGACAATTACTCTTGAAGTCGA 12209177 Query 40743 AGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802 ||| | |||| | ||| |||||| || || | |||||||| ||||| ||| | Sbjct 12209176 AGCTTCAGACACAATAGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCC 12209117 Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862 |||||||| || || || | ||| || || || |||| || | || || || ||| Sbjct 12209116 TGACCAGCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGA 12209057 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| |||||||||||| | || || ||| | || || | |||| || ||| Sbjct 12209056 CTACAATATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGGC 12209002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515203376330320