Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq13 129 4e-25 >seq13 Length=8037603 Score = 129 bits (142), Expect = 4e-25 Identities = 185/258 (72%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 97110 TAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGG 97169 ||||| || | ||| || ||||| | || |||| |||||| |||||||||||| || Sbjct 7579950 TAAATTTGTTATATGAGCAATCATGTATGTCAATAAAGAATAAGAAGCAATGTTAAATGG 7580009 Query 97170 CACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACA 97229 ||| || || || ||||| || |||||| || | ||||| ||||| | ||||| Sbjct 7580010 CACACCGAGACCTATATCGGCGCTTCTTTGGTAAAGTTGACAAGAAAGTTCACCATCGGC 7580069 Query 97230 CACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGAC 97289 |||||||| ||| | | |||||| || || | ||||||||||||| || | Sbjct 7580070 TACATAAAATTGAACAAGAATATGACAAGGAGGAAGAGCCATTTTTGGAATGTCAATTGG 7580129 Query 97290 ATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTG-TGTGTATGGTATTAATTA 97348 ||||||||||||||| | |||| ||||| | ||| || | ||||| ||| ||||| Sbjct 7580130 ATTCCAAGCACACATTATTATTCGCCTATC-ATCAGGTGTGCTTTGTATTTTATCAATTA 7580188 Query 97349 TCTGCTTTAATTGATCAA 97366 | ||||||||||||| Sbjct 7580189 CATCTTTTAATTGATCAA 7580206 Score = 122 bits (134), Expect = 6e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||| ||| ||| |||| |||||||| || ||||||| || || | |||||||| ||| Sbjct 7607608 TATTTTGCACCATAATGTCTCCATTGAAAGCCATAAATCGGGCCTAAATCTCCTTCGTCT 7607549 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 ||||| |||||| | || | | | |||||| |||| ||||||||||| | Sbjct 7607548 CTATCGATGAAACCCAATGAGTCGAGAAACTTTCTAGATGCATTGGCATCCCAAATTTTG 7607489 Query 97522 ACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCT 97581 ||||| | | || ||||| || ||| || |||||||||||||||| |||||| Sbjct 7607488 ACACCTTTATCGGATAGTTCTTTCGCGTTAGTGGAGCCTCTGATAAACCACAGCAATTCC 7607429 Query 97582 TCCACAACACCTCTCCAAAATACTCTCTTAGTTGT 97616 || ||||| | | ||||||||||| || ||||| Sbjct 7607428 TCAACAACTGCACGCCAAAATACTCGTTTTGTTGT 7607394 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 97401 ATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTC 97460 ||||| ||||||||| || |||||||| || ||||| ||||| || | ||||| ||||| Sbjct 7580624 ATATTTTGCTCCAAAGTGTCTCCATTGAAAGCCATACACAGGGCCTAAATCTCCCTCTTC 7580683 Query 97461 TCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTG 97520 || ||| ||| | ||| ||| | | || | ||| |||||||||||||| Sbjct 7580684 TCGATCGGTGAATTTACATAAATCCAAAAATTCACGTGAACTATTAGCATCCCAAATGTG 7580743 Query 97521 CACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTC 97580 ||| | | | | | ||||| | || || ||||| || ||||| | ||||| Sbjct 7580744 TACATCTTTTTCAGATAATTCTTTTGCATTTGTTGAACCTCTAATGAACCAAAGTAATTC 7580803 Query 97581 TTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 || || || || | ||||||||| | || ||||| || | ||||| Sbjct 7580804 CTCGACCACTCCCCGCCAAAATACACGTTTGGTTGTCAATAATGGAAA 7580851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346773615661490