Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 >seq2 Length=17806784 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| ||||| | |||||||| ||||| || ||||| || | ||| || |||||| Sbjct 12206968 CACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGATAAAGTACGTCCATCCTC 12207027 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||| || || ||||| |||| ||||||||||| || || || ||||| || || || Sbjct 12207028 GAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCTTTATCCTG 12207087 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| || || || | ||| | ||||||| ||| ||||| || | || | |||| Sbjct 12207088 AATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCT-TCGACTTCAAGAGTAATTGTTT 12207146 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||| || | || || || ||||| |||||| || Sbjct 12207147 TGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207181 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | ||||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 12207407 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207466 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| | || || |||||| | || ||||||||||| || || || Sbjct 12207467 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207526 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||| || ||||| ||| || || || | ||| | ||||||| ||| ||||| Sbjct 12207527 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCT-TCGAC 12207585 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | |||||||| || | || || || ||||| |||||| || Sbjct 12207586 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207637 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | ||||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 12207863 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207922 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| | || || |||||| | || ||||||||||| || || || Sbjct 12207923 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207982 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||| || ||||| ||| || || || | ||| | ||||||| ||| ||||| Sbjct 12207983 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCT-TCGAC 12208041 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | |||||||| || | || || || ||||| |||||| || Sbjct 12208042 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208093 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | ||||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 12208091 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208150 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| | || || |||||| | || ||||||||||| || || || Sbjct 12208151 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208210 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||| || ||||| ||| || || || | ||| | ||||||| ||| ||||| Sbjct 12208211 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCT-TCGAC 12208269 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | |||||||| || | || || || ||||| |||||| || Sbjct 12208270 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208321 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | ||||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 12208319 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208378 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| | || || |||||| | || ||||||||||| || || || Sbjct 12208379 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208438 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||| || ||||| ||| || || || | ||| | ||||||| ||| ||||| Sbjct 12208439 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCT-TCGAC 12208497 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | |||||||| || | || || || ||||| |||||| || Sbjct 12208498 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208549 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | ||||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 12208547 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208606 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| | || || |||||| | || ||||||||||| || || || Sbjct 12208607 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208666 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||| || ||||| ||| || || || | ||| | ||||||| ||| ||||| Sbjct 12208667 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCT-TCGAC 12208725 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | |||||||| || | || || || ||||| |||||| || Sbjct 12208726 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12208777 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | ||||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 12208775 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208834 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| | || || |||||| | || ||||||||||| || || || Sbjct 12208835 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208894 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||| || ||||| ||| || || || | ||| | ||||||| ||| ||||| Sbjct 12208895 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCT-TCGAC 12208953 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | |||||||| || | || || || ||||| |||||| || Sbjct 12208954 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12209005 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | || || ||||| || | || ||||| || || || ||||| ||| | Sbjct 12207179 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207238 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| | || || |||||| | || ||||||||||| || || || Sbjct 12207239 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207298 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||| || ||||| ||| || || || | ||| | ||||||| ||| ||||| Sbjct 12207299 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCT-TCGAC 12207357 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | |||||||| || | || || || ||||| |||||| || Sbjct 12207358 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207409 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | || || ||||| || | || ||||| || || || ||||| ||| | Sbjct 12207635 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207694 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| | || || |||||| | || ||||||||||| || || || Sbjct 12207695 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207754 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||| || ||||| ||| || || || | ||| | ||||||| ||| ||||| Sbjct 12207755 ATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCT-TCGAC 12207813 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | || | |||||||| || | || || || ||||| |||||| || Sbjct 12207814 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATGCCT 12207865 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| | | ||||| ||||| || | || ||||| || || || ||||| ||| | Sbjct 12209003 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12209062 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| | || || |||||| | || ||||||||||| || || || Sbjct 12209063 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12209122 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||| || ||||| || || || || | ||| | ||||| | ||| ||||| Sbjct 12209123 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCT-TCGAC 12209181 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | || || || |||| || |||||||| ||||||||| Sbjct 12209182 TTCAAGAGTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCATG 12209230 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTC 118588 |||| || | ||| || || |||||||| |||||||| | | |||| | ||| || Sbjct 3492048 CAAGATGCAATGTTGATTCCTTTTGAATATTGTAATC--TGAAAGTGTTCTACCATCTTC 3491991 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||||| ||||| |||| ||||| |||||||| || || || || || || || Sbjct 3491990 TAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTG 3491931 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||| |||||| | || | |||||| | ||| ||| ||||| | || | |||| Sbjct 3491930 GATTTTGGCTTTAACATTCTCAATGGTGTCTGATGC-CTCTACCTCAAGAGTAATAGTTT 3491872 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || |||| ||||| || ||||||||||| Sbjct 3491871 TACCAGTCAAGGTTTTAACGAAAATCTGCAT 3491841 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTC 118588 |||| || | ||| || || |||||||| |||||||| | | |||| | ||| || Sbjct 3493163 CAAGATGCAATGTTGATTCCTTTTGAATATTGTAATC--TGAAAGTGTTCTACCATCTTC 3493106 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||||| ||||| |||| ||||| |||||||| || || || || || || || Sbjct 3493105 TAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTG 3493046 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 ||||| |||||| | || | |||||| | ||| ||| ||||| | || | |||| Sbjct 3493045 GATTTTGGCTTTAACATTCTCAATGGTGTCTGATGC-CTCTACCTCAAGAGTAATAGTTT 3492987 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || |||| ||||| || ||||||||||| Sbjct 3492986 TACCAGTCAAGGTTTTAACGAAAATCTGCAT 3492956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433817409084244