Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq39 105 8e-18 seq30 105 8e-18 seq2 102 9e-17 seq5 84.2 3e-11 >seq39 Length=1213199 Score = 105 bits (116), Expect = 8e-18 Identities = 71/78 (91%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 98482 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 98541 Query 60126 TACTACCGAGGA-TTGAA 60142 |||||||||||| ||||| Sbjct 98542 TACTACCGAGGACTTGAA 98559 >seq30 Length=2085069 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 2070134 AAAAAAAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 2070193 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 2070194 TGACCACTATACTACCGAGGA 2070214 >seq2 Length=17806784 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | |||| |||||||| | || |||||| || |||||||| || | | Sbjct 12207179 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207238 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | |||||||||||||| || || ||||||||||| | || Sbjct 12207239 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207298 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || |||||| ||| | || | |||| | | | ||||| | ||| || Sbjct 12207299 ATGCCTTCTTTGTCC-TGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12207357 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 12207358 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207405 Score = 102 bits (112), Expect = 9e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | |||| |||||||| | || |||||| || |||||||| || | | Sbjct 12207635 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207694 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | |||||||||||||| || || ||||||||||| | || Sbjct 12207695 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207754 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || |||||| ||| | || | |||| | | | ||||| | ||| || Sbjct 12207755 ATGCCTTCTTTGTCC-TGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12207813 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 12207814 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207861 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | || |||||||| | || |||||| || |||||||| || | | Sbjct 12207407 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207466 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | |||||||||||||| || || ||||||||||| | || Sbjct 12207467 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207526 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || |||||| ||| | || | |||| | | | ||||| | ||| || Sbjct 12207527 ATGCCTTCTTTGTCC-TGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12207585 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 12207586 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207633 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | || |||||||| | || |||||| || |||||||| || | | Sbjct 12207863 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207922 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | |||||||||||||| || || ||||||||||| | || Sbjct 12207923 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207982 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || |||||| ||| | || | |||| | | | ||||| | ||| || Sbjct 12207983 ATGCCTTCTTTGTCC-TGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12208041 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 12208042 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208089 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | || |||||||| | || |||||| || |||||||| || | | Sbjct 12208091 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208150 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | |||||||||||||| || || ||||||||||| | || Sbjct 12208151 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208210 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || |||||| ||| | || | |||| | | | ||||| | ||| || Sbjct 12208211 ATGCCTTCTTTGTCC-TGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12208269 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 12208270 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208317 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | || |||||||| | || |||||| || |||||||| || | | Sbjct 12208319 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208378 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | |||||||||||||| || || ||||||||||| | || Sbjct 12208379 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208438 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || |||||| ||| | || | |||| | | | ||||| | ||| || Sbjct 12208439 ATGCCTTCTTTGTCC-TGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12208497 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 12208498 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208545 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | || |||||||| | || |||||| || |||||||| || | | Sbjct 12208547 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208606 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | |||||||||||||| || || ||||||||||| | || Sbjct 12208607 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208666 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || |||||| ||| | || | |||| | | | ||||| | ||| || Sbjct 12208667 ATGCCTTCTTTGTCC-TGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12208725 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 12208726 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208773 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | || |||||||| | || |||||| || |||||||| || | | Sbjct 12208775 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208834 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | |||||||||||||| || || ||||||||||| | || Sbjct 12208835 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208894 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || |||||| ||| | || | |||| | | | ||||| | ||| || Sbjct 12208895 ATGCCTTCTTTGTCC-TGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12208953 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 12208954 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12209001 Score = 95.1 bits (104), Expect = 1e-14 Identities = 170/247 (69%), Gaps = 1/247 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| | | || |||||||| | || |||||| || |||||||| || | | Sbjct 12209003 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12209062 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || | |||||||||||||| || || ||||||||||| | || Sbjct 12209063 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12209122 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || || |||||| ||| || |||| | | | ||||| | ||| || Sbjct 12209123 ATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACT 12209182 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT-TTTTACGCCGAA 43195 || | || || || || || || | |||||||||||||| ||||| ||| | | | Sbjct 12209183 TCAAGAGTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCATGATTTTCTGCAAG 12209242 Query 43196 TACAATG 43202 ||||||| Sbjct 12209243 TACAATG 12209249 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| ||||| | ||| || || | || ||||||||| |||||||| |||| Sbjct 12206950 TCCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGA 12207009 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 | ||| || | || || || ||||| ||||| || || || ||||||||||| | || Sbjct 12207010 TAAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGG 12207069 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | || || || ||| ||| | || | |||| | | | ||||| | ||| | Sbjct 12207070 AATGCCTTCTTTATCC-TGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207128 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || || |||||||| |||| ||||| || || |||||||| Sbjct 12207129 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207177 >seq5 Length=15084686 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | ||| | || ||||||||||||| ||||||||||||||||||| | |||| Sbjct 3905620 AAAAAGATACTCTCCAGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCAGGGATAC 3905679 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||| || || Sbjct 3905680 TAACCACTATACTACTGAAGA 3905700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571800038051960