Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2 116 6e-21 seq34 113 7e-20 >seq2 Length=17806784 Score = 116 bits (128), Expect = 6e-21 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | || | ||| | || |||||||| || ||||| || | Sbjct 3493412 TTCCACCACGAAGGCGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGG 3493353 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||||| | ||| || |||||||| || |||||||| | | ||||||||| || | Sbjct 3493352 ATAATGTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTG 3493293 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||||||||||||||| |||||| ||| ||| | Sbjct 3493292 GAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAA 3493233 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| ||||| || ||||||||||| |||||||| | || ||||||||| Sbjct 3493232 CTTCCAGTGTAATAGTTTTACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 114 bits (126), Expect = 2e-20 Identities = 111/140 (79%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | ||| | | || | ||| || || ||||| ||| || ||||| |||||| Sbjct 3492069 TTCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGA-ATATTGTAATCT 3492011 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||| ||||| | ||| ||||||||||| |||||||| || | | ||||||||| || Sbjct 3492010 GAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGG 3491951 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| || Sbjct 3491950 GGAATTCCTTCTTTATCCTG 3491931 Score = 114 bits (126), Expect = 2e-20 Identities = 111/140 (79%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCT 146107 ||||||| | ||| | | || | ||| || || ||||| ||| || ||||| |||||| Sbjct 3493184 TTCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGA-ATATTGTAATCT 3493126 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 ||||| ||||| | ||| ||||||||||| |||||||| || | | ||||||||| || Sbjct 3493125 GAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGG 3493066 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||||||||||||||| || Sbjct 3493065 GGAATTCCTTCTTTATCCTG 3493046 >seq34 Length=1613596 Score = 113 bits (124), Expect = 7e-20 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 |||||||| || || | ||| | | || || | |||||||||||||||||| |||||| Sbjct 772950 ATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTTCCAGCAAAAATTAATCTT 773009 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 || ||||| ||||| || |||||||||||||| ||| Sbjct 773010 TGTTGATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCTTTCACATTTTCAATCGTA 773069 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 ||||| |||||||||||| || || || || |||||||| ||||||| ||| |||||| Sbjct 773070 TCTGATGCTTCTACTTCTAGGGTAATAGTCTTCCCTGTTAAAGTTTTAACGAAGATTTGC 773129 Query 146276 ATT 146278 ||| Sbjct 773130 ATT 773132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743503564445440