Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq13 116 3e-21 >seq13 Length=8037603 Score = 116 bits (128), Expect = 3e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 20334 AATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGT 20393 |||||||| ||||| || ||||| |||| ||| | | | ||||| | | |||| | Sbjct 7609556 AATTAAAAACAACCCCAATGACAGGCGAATCATTATGAGTTCTTGGAATCCAATAGATAT 7609615 Query 20394 GCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGA 20453 || | |||||| | || || |||||| ||| | ||||| ||||| ||| || Sbjct 7609616 ACCGATGATGGCTCTCCCACCCTGTCATTCGCTCTCGCAATTCTACGTGTGTAACGGCGA 7609675 Query 20454 ATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATAT 20513 ||| || ||||| | |||||| | | | |||||||||| |||| |||||||||||||| Sbjct 7609676 ATTATCTTGTCATCTTTATCAAAGGGCAGGTGATATGGGATTGGGAGTTCCTTTCAATAT 7609735 Query 20514 TGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTAC 20555 ||| ||||| || ||||| | |||||||| || || || Sbjct 7609736 TGCTTCGTATGCCCTACTTACTTGCATGATTGCTCACGTGAC 7609777 Score = 113 bits (124), Expect = 4e-20 Identities = 175/250 (70%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 20043 ATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATG 20102 |||||| ||||| || || ||||| ||||||||| || || || || || ||| | || Sbjct 7580852 ATTTCCATTATTGACAACCAAACGTGTATTTTGGCGGGGAGTGGTCGAGGAATTACTTTG 7580793 Query 20103 GTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAG 20162 ||| |||| ||| ||||||||| | | || | ||||||| || | |||||| Sbjct 7580792 GTTCATTAGAGGTTCAACAAATGCAAAAGAATTATCTGAAAAAGATGTACACATTTGGGA 7580733 Query 20163 CGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAGGGGGA 20222 || || | || ||||||| | | ||| | | || ||||||| || Sbjct 7580732 TGCTAATAGTTCACGTGAATTTTTGGATTTATGTAAATTCACCGATCGAGAAGAGGGAGA 7580673 Query 20223 TTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAA 20282 ||| || ||||||||||| |||||||||||||| |||||||| ||||| | | ||| | Sbjct 7580672 TTTAGGCCCTGTGTATGGCTTTCAATGGAGACACTTTGGAGCAAAATATATAAATATGCA 7580613 Query 20283 CACAAATTAT 20292 |||| ||||| Sbjct 7580612 CACAGATTAT 7580603 Score = 96.9 bits (106), Expect = 3e-15 Identities = 180/262 (69%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 20043 ATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATG 20102 |||||| ||| | || || ||||| ||||||||| | |||||||| || || | || Sbjct 7607381 ATTTCCATTACTCACAACAAAACGAGTATTTTGGCGTGCAGTTGTTGAGGAATTGCTGTG 7607440 Query 20103 GTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAG 20162 |||||| | ||| || || || | | || || || ||||| || || |||||| Sbjct 7607441 GTTTATCAGAGGCTCCACTAACGCGAAAGAACTATCCGATAAAGGTGTCAAAATTTGGGA 7607500 Query 20163 CGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGA-CAACCGTCAAGAGGGGG 20221 || ||| ||||| | ||| | || || ||| ||| | | | | | || || | Sbjct 7607501 TGCCAATGCATCTAGAAAGTTTCTCGACT-CATTGGGTTTCATCGATAGAGACGAAGGAG 7607559 Query 20222 ATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGA 20281 |||| || || | ||||| |||||||||||||||| ||| || |||| | |||||| Sbjct 7607560 ATTTAGGCCCGATTTATGGCTTTCAATGGAGACATTATGGTGCAAAATACATCGACATGT 7607619 Query 20282 ACACAAATTATTTTGGACAAGG 20303 | ||| ||||| || ||||| Sbjct 7607620 ATACAGATTATACAGGCCAAGG 7607641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399172046559865