Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 6e-11 >seq2 Length=17806784 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 24826 AACATCATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAA 24885 || ||||||||||| ||||| || || || || || || || || || | || |||||| Sbjct 12209235 AAAATCATGCAGATCTTTGTAAAGACATTGACTGGGAAGACAATTACTCTTGAAGTCGAA 12209176 Query 24886 TCGAGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTT 24945 | |||| |||||| ||| |||| || || | ||||||||| | || | Sbjct 12209175 GCTTCAGACACAATAGAAAATGTCAAGGCTAAGATCCAGGACAAAGAAGGCATTCCCCCT 12209116 Query 24946 GACCAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGAT 25005 |||||||| ||| | || | || || || ||| |||| ||| ||| || ||| Sbjct 12209115 GACCAGCAGCGTCTGATTTTCGCTGGTAAGCAATTGGAGGATGGACGTACTCTGTCCGAC 12209056 Query 25006 TACAGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 |||| || ||||| ||| | || |||||||| || | || || | ||||| Sbjct 12209055 TACAATATCCAGAAGGAGTCAACTCTTCATTTGGTTCTGAGACTGAGAGGAGG 12209003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418291474017440