Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq64 100 1e-16 >seq64 Length=39090 Score = 100 bits (110), Expect = 1e-16 Identities = 324/492 (66%), Gaps = 27/492 (5%) Strand=Plus/Minus Query 33405 TCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAG 33464 || ||||| || |||||||||| || || ||||| |||||| ||| |||||||||| Sbjct 38506 TCTGCTTCTGCTGGCGGGATATGCCCCGGCCTTTCCAGCAGCCGGCGATTGTTGTACCAG 38447 Query 33465 GCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCCTCGTTTTCCAAGGGGCGCGCCGA 33524 | ||||| ||||| ||| |||| || | ||||||| ||| Sbjct 38446 TCCACCCACGCCAGCT---CCACTTCGGCGCGGT------TTTTCCATTTCTTGCGG--- 38399 Query 33525 TGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGCTG 33584 || |||| || | || || ||||| ||||| | || |||| || |||||||| | Sbjct 38398 TGTATCACCTCTGCTTTATAAAGGCCATTGATACTCTCTGCCATTGCGTTGTCGTATGAG 38339 Query 33585 TCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTAGCGA 33644 ||||| ||| ||| ||| | | | || || || ||||||| |||| || Sbjct 38338 TCGCCTGTGCTCCCGT-TGATGCCAGTAGCCCTGCGTCCTTAAGCCGTTGCGTGTA-CGC 38281 Query 33645 ATGCTG-ACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCCGG 33703 || || || || || || | || || ||||| || ||| |||| |||| Sbjct 38280 CAGCGACACATACTGCGAGCCTTTATCTGAGTGATGGAT---AGT----TCCTG--CCGG 38230 Query 33704 TTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGTCATCGACGA 33763 | ||||| ||| ||| || || | || ||||| || || ||| |||||| || Sbjct 38229 CCGTCGGGCCCACAACGCCTGCTCCGGCGCGTCCAGTACGAACGTCGTTTCCATCGATGA 38170 Query 33764 GCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGTACAG 33823 |||||| |||| || ||||| | |||||||||||||| | ||| ||||| || || Sbjct 38169 CGACACCCGC-AGCCCACGATACGACCCGCGAACACGTCGATGATGAACGCCACATA-AG 38112 Query 33824 C-CAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACCCAGAGCTGATTCGGTCGGT 33882 | |||| ||||| || ||| ||||| || || | |||||| ||||| | || || Sbjct 38111 CAAAGCCCTGCCAGGTGCTGACGTACGTGAAGTCTGCCACCCACAGCTGGTCTGGCCGTC 38052 Query 33883 CAGCCTTGAACT 33894 || || ||||| Sbjct 38051 CAACCACGAACT 38040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170667020324390