Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8 143 3e-29 seq3 93.3 5e-14 >seq8 Length=10932247 Score = 143 bits (158), Expect = 3e-29 Identities = 221/313 (71%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || |||||||| || || ||||| || || | | ||||||| ||||||||||||||| Sbjct 3798658 TTACCTGTATTTTTCTTTAGATCAAGAAATTCAAATATATCAGCATGCCACGGTTCCAAA 3798599 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || ||||| | | ||||| | || ||||| || ||||| | |||| || || ||| Sbjct 3798598 TACATGGCAAATGCCCCAGGTCTCTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 3798539 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGA-TATA 63511 ||||||||||| | ||| |||| | || || ||||| ||||| || || | || | || Sbjct 3798538 TTATAAACTCTTATCATAGGAACTAAGCCATTCGATATTCCATTTGTGCCAGCGATTCTA 3798479 Query 63512 GCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63571 | || | || | |||| || || | ||| || || ||||| |||| | Sbjct 3798478 G-TACCTTTTGCTCTAATAGTATGAACACTCAAACCAATGCCACCTGCAGATTTACTAAC 3798420 Query 63572 TAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAG 63631 |||||| |||| |||||| || ||||| || ||||| |||||||| || |||| | || Sbjct 3798419 TAATGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGTTAG 3798360 Query 63632 TAGAAAACAGCTA 63644 || || || ||| Sbjct 3798359 AAGGAAGCAACTA 3798347 Score = 141 bits (156), Expect = 1e-28 Identities = 238/344 (69%), Gaps = 8/344 (2%) Strand=Plus/Minus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 |||| || || | |||||| || || | ||||||||| ||| ||||||||||||| Sbjct 3799590 TACCAATTGGACGATGTCTGAAGTTCGATCTCTCAGCTTCTTTAATTGGATAATAATTAA 3799531 Query 62848 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 ||| ||||| |||| | |||| | || |||||| || || |||| ||| ||| Sbjct 3799530 GATCAATAATCTTATCTAAATTTTGGGTAACAACTTTGGTAACTTCTTTCAATTTTTGAA 3799471 Query 62908 AATCAAATCGCCCATCTATT-------ACAAACATGTTCAATGCAACAGATGCCAGATTA 62960 | ||| | || | |||| |||||||| || | || | |||||| | |||| Sbjct 3799470 AGTCATA-CGTTTTTTTATTGACATTAACAAACATATTAACAGCGATAGATGCTAAATTA 3799412 Query 62961 CACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 63020 ||||| || || |||| | | | |||||| | | || || || |||||||||| Sbjct 3799411 CACACCGCCACTTCATCTGGAGAAGAATATTGCACAACTTCGGTACATAGATTACTACTT 3799352 Query 63021 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63080 |||| || || | ||| | |||||| ||| ||||||| ||| |||||||| ||| Sbjct 3799351 CTGATGGTACCAAGATTCTTTTGATTTGACTTCCTGTTACAATGATCTTTATAAAGCATG 3799292 Query 63081 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63124 | |||||||||||||||| || || | || ||| || |||| Sbjct 3799291 TAAGGAGTACCAGTTTCAACTTGCGACTTTAAAATTGCAGTCCA 3799248 Score = 111 bits (122), Expect = 2e-19 Identities = 175/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 62316 ATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGA 62375 ||||| ||| || || || |||| ||| | ||||| ||||| ||| || | | | | Sbjct 3800453 ATAATTTCATTTTTCATTTCTTCATCCCAAATATTTCTTTCGGTCAAATCTTTTAATAAA 3800394 Query 62376 TGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTA 62435 || || ||||| || || |||||||| || | || | | || || |||||||| || Sbjct 3800393 TGAGGATTAACAACCTGAAATTCTCCCGAAAGAACGCGTCTTGTATAGATATTACTCGTG 3800334 Query 62436 TACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGT 62495 || ||||| | || |||||||| || | |||||||| || || || || ||||| || Sbjct 3800333 TAAGGTTCGATAGATTCATTATTCCCAAGTATTTGAGCTGTAGAAGCTGTTGGCATTGGA 3800274 Query 62496 GCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAA 62555 || | ||||| || | | ||| | | || ||||||||||||| | |||| Sbjct 3800273 GCAAGTAATAATGAGTTACGGATACCATCTTTTGCTATTTTATCTTTTAAAGCACTCCAA 3800214 Query 62556 TTCCAAAGATC 62566 ||||||||||| Sbjct 3800213 TTCCAAAGATC 3800203 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 63765 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAAC 63824 || || || | ||| | ||| |||||||| |||||||| | ||| || ||||| || Sbjct 3798079 ACCGCAACTCTCATAAGCATATGCTGAGGCCTTTCAACTACTTTTCCATTAATTTTTAAT 3798020 Query 63825 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63884 ||||| | ||||||| |||||||| |||||||| || || ||| |||| |||||| Sbjct 3798019 AAGTAACTTCTTTCCAATGTTTTAAATCCAAAATAATTATAACCAAAATCTCTATCGTAA 3797960 Query 63885 ATAATAACCGAATTGAGCTTATCCTTATATTT 63916 ||||| | ||||| | ||||| || | ||| Sbjct 3797959 ATAATGGCAGAATTAATTTTATCTTTGTGTTT 3797928 >seq3 Length=17417032 Score = 93.3 bits (102), Expect = 5e-14 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 33617 AATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33676 ||| | ||| ||| || || ||||| |||||||| || | |||||| ||||| ||||| Sbjct 7878531 AATCAGTTCATTACTGAATGTCAGTCCAGGCATTAGTCCTCTCTTTTTCAGCCAGAATAT 7878472 Query 33677 GGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 || |||||| || ||||||||||| || || |||||||||||||| | | ||| Sbjct 7878471 GGCAGCGAAACTGCCACTGAAGAAGATTCCCTCGACCGCAGCAAAGGCAATTACGCGCTC 7878412 Query 33737 TCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33793 || | || || || || ||||| || |||||||| || || || ||| Sbjct 7878411 GGCAAACGTAGCACTCTCGTGGTTAATCCAGTTCAAAGCCCAATTAGCTTTTTTAGCTAC 7878352 Query 33794 ACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 || |||| ||||| ||||| || || || Sbjct 7878351 GCAGGGCAGTGTTTCGATGGCGTTGAATAG 7878322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629798256726960