Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq8 143 2e-29 >seq8 Length=10932247 Score = 143 bits (158), Expect = 2e-29 Identities = 213/301 (71%), Gaps = 1/301 (0%) Strand=Plus/Minus Query 38095 TTTCTTAAGCTTA-GAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 |||||| || | | |||| || ||||||||||| ||||| ||||| | ||| || | | Sbjct 3798647 TTTCTTTAGATCAAGAAATTCAAATATATCAGCATGCCACGGTTCCAAATACATGGCAAA 3798588 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 ||| || ||||| |||| || || |||| || ||||| |||| |||||||| | ||| Sbjct 3798587 TGCCCCAGGTCTCTTATTTCCACCTTGATCAACATATCGCGCTGTATTATTATAAACTCT 3798528 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGC 38273 || |||||| |||| ||||| ||| | || ||| | || | || |||||| || || Sbjct 3798527 TATCATAGGAACTAAGCCATTCGATATTCCATTTGTGCCAGCGATTCTAGTACCTTTTGC 3798468 Query 38274 TCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTG 38333 || ||| || | ||| || || ||||||||| ||| | ||| || ||| Sbjct 3798467 TCTAATAGTATGAACACTCAAACCAATGCCACCTGCAGATTTACTAACTAATGCACATCT 3798408 Query 38334 TTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACT 38393 |||||| |||||| | || ||||| || || || || | |||| ||| | || ||||| Sbjct 3798407 TTTTAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGTTAGAAGGAAGCAACT 3798348 Query 38394 A 38394 | Sbjct 3798347 A 3798347 Score = 127 bits (140), Expect = 2e-24 Identities = 215/307 (70%), Gaps = 6/307 (2%) Strand=Plus/Minus Query 37045 TGAATAGAACCATTATGTAAC-ACAATTGTATTCTTTATGTCATTATTCCACATATTTCT 37103 |||| |||||||| | || | | |||| ||| || || || | || ||| |||||||| Sbjct 3800474 TGAACGGAACCATTGT-TAGCGATAATTTCATTTTTCATTTCTTCATCCCAAATATTTCT 3800416 Query 37104 ACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCT 37163 | | ||| | |||| || ||||| ||||||||||| ||||| || | || | Sbjct 3800415 TTCGGTCAAATCTTTTAATAAATGAGGATTAACAACCTGAAATTCTCCCGAAAGAACGCG 3800356 Query 37164 TCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGA 37223 ||||||||| ||||| || || || ||||| || || |||||||| | | |||||||| Sbjct 3800355 TCTTGTATAGATATTACTCGTGTAAGGTTCGATAGATTCATTATTCCCAAGTATTTGAGC 3800296 Query 37224 TGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAAT 37283 |||||| || || |||||||| || | || | || | | |||| | | || Sbjct 3800295 TGTAGAAGCTGTTGGCATTGGAGCAAGTAATAATGAGTTACGGATACCATCTTTTGCTAT 3800236 Query 37284 TCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG--GTTCTTTAACCACATATCA 37341 | | | ||||| || |||||| ||| | ||||||||| | | || ||||||||| Sbjct 3800235 TTTATCTTTTAAAGCACTCCAATTCCAAAGATCTGTTGGAATTACATT--CCACATATCG 3800178 Query 37342 TATTGTA 37348 ||||||| Sbjct 3800177 TATTGTA 3800171 Score = 102 bits (112), Expect = 8e-17 Identities = 221/328 (67%), Gaps = 16/328 (5%) Strand=Plus/Minus Query 37575 TTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT---TAACTAGTAT 37631 |||| | | |||||||||||| | ||| || || |||| || ||||| |||| | Sbjct 3799553 TTCTTTAATTGGATAATAATTAAGATCAATAATCTTATCTAAATTTTGGGTAAC---AAC 3799497 Query 37632 TTTCGTAATTATTCTCAACTTGTCGAACATAAATACGTTATT--------ATTAACAAAT 37683 ||| |||| | | |||| || | ||| | ||||||| || ||||||||| Sbjct 3799496 TTTGGTAACTTCTTTCAA-TTTTTGAA-AGTCATACGTTTTTTTATTGACATTAACAAAC 3799439 Query 37684 TTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGT 37743 || | | | |||||| ||| |||||| || || ||||||||| | | |||| Sbjct 3799438 ATATTAACAGCGATAGATGCTAAATTACACACCGCCACTTCATCTGGAGAAGAATATTGC 3799379 Query 37744 ATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTT 37803 | || || ||||| |||||||| ||| || || || | ||| ||||||| || || Sbjct 3799378 ACAACTTCGGTACATAGATTACTACTTCTGATGGTACCAAGATTCTTTTGATTTGACTTC 3799319 Query 37804 TTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATA 37863 | |||||| ||||||||| || || || || || || ||| | ||| | || | | Sbjct 3799318 CTGTTACAATGATCTTTATAAAGCATGTAAGGAGTACCAGTTTCAACTTGCGACTTTAAA 3799259 Query 37864 ATAGATTTCCATAAACTTCTTGCTTTAA 37891 || | |||||||| ||| || |||| Sbjct 3799258 ATTGCAGTCCATAAATCTCTGGCATTAA 3799231 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 37401 TTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTAT 37460 ||| |||| ||||||||||| || | || ||||||| | ||||| |||||||| || Sbjct 3799803 TTTGGCTATTTCGCAACTAGCCTCCAAAGCTCCATAATACAAAGTTTCAAAAATTTGAAT 3799744 Query 37461 ATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGC 37520 ||| | | | | ||||||||||| || |||| ||| |||| || | ||| ||||||| Sbjct 3799743 ATTAAGTTTCTGCGCTTCTTCGCTTTCAAATGGATAACCCATCAACAAAAATGCATCAGC 3799684 Query 37521 CAAACCCTGAACACCGATACCTAT 37544 || ||||||| || |||||||| Sbjct 3799683 TAATCCCTGAATTCCAATACCTAT 3799660 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 37972 GGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAAT 38031 ||||||||| ||| ||||||| | |||| | |||| || || | |||||||||| Sbjct 3798977 GGACATTCGTGTGGGCACATTAAACTCCATATTCCATCATTCAAAACTCTTTCCATAAAT 3798918 Query 38032 AAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACA 38091 |||||||| | ||| || ||| |||||| ||| | | ||||| |||||| || |||||| Sbjct 3798917 AAATCAGGGATCCACAAAGCATAAAATAACTCTCTCGCTCTATTTTCTTCTTTACCTACA 3798858 Query 38092 TT 38093 || Sbjct 3798857 TT 3798856 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 ||||||| ||||||||||| || || ||| || ||| || | | | |||| || Sbjct 3800738 TCCATCCATAAAAATGCATCGATGTAAGCTTTTCGGCTGTTGGTTGAGCCATATGTACGT 3800679 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 | | ||||| |||||| || || || |||| || || ||||||| ||||| || Sbjct 3800678 TTAGAGATTGTGATTGATCAATGAATGCTCCTCGATCAGCAGCCATTTTCAAAATTGTTT 3800619 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTA 37021 | ||||| || ||||| |||||||| |||| |||||||| Sbjct 3800618 TCTGAGAAATTTCCCATACCGTTTTGTATAATTGTTTTA 3800580 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 38466 ATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCT 38525 ||||||||| |||||||| || | || | || | ||||| ||| | | | || || Sbjct 3798128 ATAATTATACGTTTCTATCACCTTTTCGAGTTCTTCTCCGTGGATAGCAACCGCAACTCT 3798069 Query 38526 CATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTT 38585 ||| |||||||| || || ||||| | || ||| ||| ||| | || || | | Sbjct 3798068 CATAAGCATATGCTGAGGCCTTTCAACTACTTTTCCATTAATTTTTAATAAGTAACTTCT 3798009 Query 38586 TTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTATGCTATTACATT 38645 ||| |||||||| | |||||||||| |||| | ||||||||||||| || || Sbjct 3798008 TTCCAATGTTTTAAATCCAAAATAATTATAACCAAAATCTCTATCGTAAATAATGGCAGA 3797949 Query 38646 ATCGATTATATCTCTATGTTT 38666 || ||| ||||| | ||||| Sbjct 3797948 ATTAATTTTATCTTTGTGTTT 3797928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468510410432080