Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 105 7e-18 >seq2 Length=17806784 Score = 105 bits (116), Expect = 7e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | |||||||||| ||||||||| ||||| || || || || Sbjct 12206951 CCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGAT 12207010 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || ||||| || || |||||| |||||||||| ||||| || || || Sbjct 12207011 AAAGTACGTCCA-TCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGG 12207069 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 ||||||||||| || ||| | || | || | | ||| | |||||| | | || | Sbjct 12207070 AATGCCTTCTTTATC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207128 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | || ||||| || || || || ||||| |||||||| Sbjct 12207129 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207177 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || |||||||| || ||||| | ||| || ||||| | ||||||||| Sbjct 3492037 GTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTCTAATTGTTTACCA 3491978 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||||||||| || || || |||||||| || |||||| ||| Sbjct 3491977 GCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCTTTA 3491918 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||| ||||||| || | || || || ||||| ||| Sbjct 3491917 ACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGTT 3491858 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 3491857 TTAACGAAAATCTGCAT 3491841 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || |||||||| || ||||| | ||| || ||||| | ||||||||| Sbjct 3493152 GTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTCTAATTGTTTACCA 3493093 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| |||||||||||||| || || || |||||||| || |||||| ||| Sbjct 3493092 GCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCTTTA 3493033 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | ||| ||||||| || | || || || ||||| ||| Sbjct 3493032 ACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGTT 3492973 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 3492972 TTAACGAAAATCTGCAT 3492956 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139567 CGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 ||| || |||||||| |||||||| ||| | ||| || ||||| | |||||||| Sbjct 3493381 CGTTGATTCTTTTTGGATGTTATAGTCGGATAATGTTCTTCCATCTTCCAATTGTTTACC 3493322 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TT 139685 ||| | || |||||||||||||| || || || |||||||| || ||| |||| | || Sbjct 3493321 GGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATC-TTGAATTTTAGCTT 3493263 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | | ||| | || |||| | || || || | || | || || || ||||| | Sbjct 3493262 TCACATTTTCAATAGTATCGGAAGCTTCAACTTCCAGTGTAATAGTTTTACCTGTCAATG 3493203 Query 139746 TTTTTACGAATATTTGCAT 139764 |||| || || |||||||| Sbjct 3493202 TTTTGACAAAAATTTGCAT 3493184 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| ||| || |||| || ||||| || || || || || ||| Sbjct 12207178 GCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207237 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || || | || | || || | || |||||||| | |||||||| ||||| || || | Sbjct 12207238 CAGAGTACGTCCA-TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGG 12207296 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | |||||||||||||| ||| | || | || | | ||| | |||||| | | || Sbjct 12207297 GAATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12207355 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| || | || ||||| || || || || ||||| |||||||| Sbjct 12207356 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207405 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| ||| || |||| || ||||| || || || || || ||| Sbjct 12207634 GCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207693 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || || | || | || || | || |||||||| | |||||||| ||||| || || | Sbjct 12207694 CAGAGTACGTCCA-TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGG 12207752 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | |||||||||||||| ||| | || | || | | ||| | |||||| | | || Sbjct 12207753 GAATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12207811 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || |||| || | || ||||| || || || || ||||| |||||||| Sbjct 12207812 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207861 Score = 82.4 bits (90), Expect = 8e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGT 139610 || ||| || |||| || ||||| || || || || || ||| || || | || | | Sbjct 12209017 CAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGTCCA-T 12209075 Query 139611 CTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 139670 | || | || |||||||| | |||||||| ||||| || || || ||||||||||||| Sbjct 12209076 CCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGAATGCCTTCTTTGT 12209135 Query 139671 CGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCG 139730 | ||| || || | | ||| | |||||| | | || || |||| || | | Sbjct 12209136 CCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGACTTCAAGAGTAATTG 12209195 Query 139731 TCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || ||||| || ||||| || || ||||| Sbjct 12209196 TCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 12209229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496048764634400