Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8 152 7e-32 seq3 84.2 3e-11 >seq8 Length=10932247 Score = 152 bits (168), Expect = 7e-32 Identities = 223/313 (71%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || |||||||| || || ||||| || || | | ||||||| ||||||||||||||| Sbjct 3798658 TTACCTGTATTTTTCTTTAGATCAAGAAATTCAAATATATCAGCATGCCACGGTTCCAAA 3798599 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 || ||||| | | || |||| || ||||| || ||||| | |||| || || ||| Sbjct 3798598 TACATGGCAAATGCCCCAGGTCTCTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 3798539 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGA-TATA 80183 ||||||||||| | ||| |||| | ||||| ||| | ||||| || || | || | || Sbjct 3798538 TTATAAACTCTTATCATAGGAACTAAGCCATTCGATATTCCATTTGTGCCAGCGATTCTA 3798479 Query 80184 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 80243 | | || | || | |||| || || | ||| || || ||||| |||| | Sbjct 3798478 G-TACCTTTTGCTCTAATAGTATGAACACTCAAACCAATGCCACCTGCAGATTTACTAAC 3798420 Query 80244 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAG 80303 |||||| |||| |||||| |||||||| || || || |||||||| ||| |||| | || Sbjct 3798419 TAATGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGTTAG 3798360 Query 80304 TAGAAAACAGCTA 80316 || || || ||| Sbjct 3798359 AAGGAAGCAACTA 3798347 Score = 149 bits (164), Expect = 9e-31 Identities = 216/305 (71%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||||| ||| ||| | || ||||| ||| || || ||||||| ||| | ||||| Sbjct 3800475 CTGAACGGAACCATTGTTAGCGATAATTTCATTTTTCATTTCTTCATCCCAAATATTTCT 3800416 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||||| ||| || | | | ||| |||||||| || ||||||||||| || | || | Sbjct 3800415 TTCGGTCAAATCTTTTAATAAATGAGGATTAACAACCTGAAATTCTCCCGAAAGAACGCG 3800356 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 | || || |||||||| || || ||||| | ||||||||||| || | |||||||| Sbjct 3800355 TCTTGTATAGATATTACTCGTGTAAGGTTCGATAGATTCATTATTCCCAAGTATTTGAGC 3800296 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || || |||||||| || || | ||||| || | | ||| | | | || Sbjct 3800295 TGTAGAAGCTGTTGGCATTGGAGCAAGTAATAATGAGTTACGGATACCATCTTTTGCTAT 3800236 Query 79206 TTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATA 79265 ||||||||||| || ||||| ||||||||| | || | |||||||| | ||| || Sbjct 3800235 TTTATCTTTTAAAGCACTCCAATTCCAAAGATCTGTTGGAATTACATTCCACATATCGTA 3800176 Query 79266 TTGTA 79270 ||||| Sbjct 3800175 TTGTA 3800171 Score = 132 bits (146), Expect = 7e-26 Identities = 236/344 (69%), Gaps = 8/344 (2%) Strand=Plus/Minus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| || || | |||||| || || | ||||||||| ||| ||||||||||||| Sbjct 3799590 TACCAATTGGACGATGTCTGAAGTTCGATCTCTCAGCTTCTTTAATTGGATAATAATTAA 3799531 Query 79520 TATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAA 79579 ||| ||||| |||| | ||| | | |||||| || || || | ||| ||| Sbjct 3799530 GATCAATAATCTTATCTAAATTTTGGGTAACAACTTTGGTAACTTCTTTCAATTTTTGAA 3799471 Query 79580 AATCAAATCGTCCATCTATT-------ACAAACATGTTCAACGCGACAGATGCCAGATTA 79632 | ||| | ||| | |||| |||||||| || | |||| |||||| | |||| Sbjct 3799470 AGTCATA-CGTTTTTTTATTGACATTAACAAACATATTAACAGCGATAGATGCTAAATTA 3799412 Query 79633 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACAC 79692 || || || || |||| | | | |||||| | | ||| || || || ||||||| Sbjct 3799411 CACACCGCCACTTCATCTGGAGAAGAATATTGCACAACTTCGGTACATAGATTACTACTT 3799352 Query 79693 TTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 79752 | ||||| || | ||| | |||||| ||| ||||||| ||| |||||||| ||| Sbjct 3799351 CTGATGGTACCAAGATTCTTTTGATTTGACTTCCTGTTACAATGATCTTTATAAAGCATG 3799292 Query 79753 AACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 79796 | |||||||||||||||| || || | || ||| || |||| Sbjct 3799291 TAAGGAGTACCAGTTTCAACTTGCGACTTTAAAATTGCAGTCCA 3799248 Score = 104 bits (114), Expect = 3e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 80437 ACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 80496 ||||| || | ||| | ||| |||||||| |||||||| | || ||| ||||| || Sbjct 3798079 ACCGCAACTCTCATAAGCATATGCTGAGGCCTTTCAACTACTTTTCCATTAATTTTTAAT 3798020 Query 80497 AAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 80556 |||||| | ||||||| |||||||| |||||||| || || ||| |||| |||||| Sbjct 3798019 AAGTAACTTCTTTCCAATGTTTTAAATCCAAAATAATTATAACCAAAATCTCTATCGTAA 3797960 Query 80557 ATAATAACCGAGTTGAGTTTATCCTTATATTT 80588 ||||| | || || | |||||| || | ||| Sbjct 3797959 ATAATGGCAGAATTAATTTTATCTTTGTGTTT 3797928 Score = 96.9 bits (106), Expect = 5e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 79314 TCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAA 79373 ||||| || || ||||| ||| ||||| ||||| || ||||| ||||| | ||||| || Sbjct 3799812 TCCTTTCTCTTTGGCTATTTCGCAACTAGCCTCCAAAGCTCCATAATACAAAGTTTCAAA 3799753 Query 79374 AATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAA 79433 ||| | |||| || | || |||||| ||| |||||||||||| | | | ||| Sbjct 3799752 AATTTGAATATTAAGTTTCTGCGCTTCTTCGCTTTCAAATGGATAACCCATCAACAAAAA 3799693 Query 79434 CGCGTCTGCTAATCCTTGAACACCAATACCGAT 79466 || || |||||||| |||| |||||||| || Sbjct 3799692 TGCATCAGCTAATCCCTGAATTCCAATACCTAT 3799660 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 80680 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATG 80739 ||||| | |||||| ||||| || |||| ||| || || |||||||| || ||||| ||| Sbjct 3797712 CTAAACACTTTTTTGGTTTCTTTATGTAAATTAGAAACTGCTATTCTTGCTGCTAATATG 3797653 Query 80740 GCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 80799 |||||||||| ||||| || || || || | |||| || || | | || | | Sbjct 3797652 GCATAATCTGCATGTTTCGTTGTCATTGTTGCAGAAGTTTCTGCAGCTAAGTTATCAAGT 3797593 Query 80800 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 80837 || || ||||| |||||| ||| | || | |||||| Sbjct 3797592 TCCACAGTTGTGACTCCAGAATAAAGACCATTGATAAC 3797555 >seq3 Length=17417032 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/210 (69%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 49995 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 50054 ||| ||||| || || || ||||| |||||||| || | |||||| ||||| ||||| Sbjct 7878531 AATCAGTTCATTACTGAATGTCAGTCCAGGCATTAGTCCTCTCTTTTTCAGCCAGAATAT 7878472 Query 50055 GGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 || || || ||| ||||||||||| || || || |||||||||| | | ||| Sbjct 7878471 GGCAGCGAAACTGCCACTGAAGAAGATTCCCTCGACCGCAGCAAAGGCAATTACGCGCTC 7878412 Query 50115 TCCATAACTGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 50171 || | | || || || || ||||| || |||||||| || || || ||| Sbjct 7878411 GGCAAACGTAGCACTCTCGTGGTTAATCCAGTTCAAAGCCCAATTAGCTTTTTTAGCTAC 7878352 Query 50172 ACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 || |||| ||||| ||||| || || || Sbjct 7878351 GCAGGGCAGTGTTTCGATGGCGTTGAATAG 7878322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718246740169480