Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2 118 8e-22 >seq2 Length=17806784 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | |||||| | |||||||| | ||| |||||| || | |||||| ||||| Sbjct 12207406 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207465 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || |||||| | || |||||||| || || || ||||||| ||||| || || | || Sbjct 12207466 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207525 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || |||| || | ||||| | | | |||||| ||| |||| Sbjct 12207526 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207584 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| || |||| || || || ||||||||||| Sbjct 12207585 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207633 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | |||||| | |||||||| | ||| |||||| || | |||||| ||||| Sbjct 12207862 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207921 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || |||||| | || |||||||| || || || ||||||| ||||| || || | || Sbjct 12207922 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207981 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || |||| || | ||||| | | | |||||| ||| |||| Sbjct 12207982 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208040 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| || |||| || || || ||||||||||| Sbjct 12208041 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208089 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | |||||| | |||||||| | ||| |||||| || | |||||| ||||| Sbjct 12208090 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208149 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || |||||| | || |||||||| || || || ||||||| ||||| || || | || Sbjct 12208150 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12208209 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || |||| || | ||||| | | | |||||| ||| |||| Sbjct 12208210 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208268 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| || |||| || || || ||||||||||| Sbjct 12208269 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208317 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | |||||| | |||||||| | ||| |||||| || | |||||| ||||| Sbjct 12208318 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208377 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || |||||| | || |||||||| || || || ||||||| ||||| || || | || Sbjct 12208378 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12208437 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || |||| || | ||||| | | | |||||| ||| |||| Sbjct 12208438 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208496 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| || |||| || || || ||||||||||| Sbjct 12208497 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208545 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | |||||| | |||||||| | ||| |||||| || | |||||| ||||| Sbjct 12208546 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208605 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || |||||| | || |||||||| || || || ||||||| ||||| || || | || Sbjct 12208606 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12208665 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || |||| || | ||||| | | | |||||| ||| |||| Sbjct 12208666 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208724 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| || |||| || || || ||||||||||| Sbjct 12208725 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208773 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | |||||| | |||||||| | ||| |||||| || | |||||| ||||| Sbjct 12208774 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208833 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || |||||| | || |||||||| || || || ||||||| ||||| || || | || Sbjct 12208834 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12208893 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || |||| || | ||||| | | | |||||| ||| |||| Sbjct 12208894 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208952 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| || |||| || || || ||||||||||| Sbjct 12208953 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12209001 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | ||||| | |||||||| | ||| |||||| || | |||||| ||||| Sbjct 12207178 GCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207237 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || |||||| | || |||||||| || || || ||||||| ||||| || || | || Sbjct 12207238 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207297 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || |||| || | ||||| | | | |||||| ||| |||| Sbjct 12207298 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207356 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| || |||| || || || ||||||||||| Sbjct 12207357 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207405 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||| | ||||| | |||||||| | ||| |||||| || | |||||| ||||| Sbjct 12207634 GCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207693 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || |||||| | || |||||||| || || || ||||||| ||||| || || | || Sbjct 12207694 CAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGG 12207753 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || |||| || | ||||| | | | |||||| ||| |||| Sbjct 12207754 AATGCCTTCTTTGTC-CTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207812 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| || |||| || || || ||||||||||| Sbjct 12207813 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207861 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || ||||||||||| ||||||||||| | || |||||||| | || | |||||||| Sbjct 3492223 TCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTTG 3492164 Query 43015 TCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATA 43074 || |||| | |||| || | ||| || || ||| || || || | ||| || Sbjct 3492163 TCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCCAACGTGATG 3492104 Query 43075 GTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| || |||| ||||| ||||||||||||||| Sbjct 3492103 GTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||||||||| | |||||| || || || |||||| | || || | ||| ||||| ||||| Sbjct 12206986 CTCCTTTTGGATATTGTAGTCAGATAAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAA 12207045 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 |||| ||||| || || | || | |||||||| || |||| || | ||||| Sbjct 12207046 GATCAGACGCTGCTGGTCTGGGGGAATGCCTTCTTTATC-CTGAATCTTAGCCTTGACAT 12207104 Query 43037 TGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | | | |||||| ||| ||||| || | || || ||||| || |||| || || | Sbjct 12207105 TTTCTATTGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAA 12207164 Query 43097 CAAAAATTTGCAT 43109 | ||||||||||| Sbjct 12207165 CGAAAATTTGCAT 12207177 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | || || ||||| ||||| | | | || ||||||||||| ||||||||| Sbjct 3493374 TCTTTTTGGATGTTATAGTCGGATAATGTTCTTCCATCTTCCAATTGTTTACCGGCAAAA 3493315 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || | || || ||||| | || | |||||||| || || |||| || | Sbjct 3493314 ATGAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTT 3493255 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| || ||| ||| || || || | || |||||||| || || | ||||| ||| Sbjct 3493254 TCAATAGTATCGGAAGCTTCAACTTCCAGTGTAATAGTTTTACCTGTCAATGTTTTGACA 3493195 Query 43099 AAAATTTGCATT 43110 |||||||||||| Sbjct 3493194 AAAATTTGCATT 3493183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381358180006506