Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8 138 2e-27 >seq8 Length=10932247 Score = 138 bits (152), Expect = 2e-27 Identities = 198/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||||| ||| ||| | || ||||| |||||| || ||||||| ||| | ||||| Sbjct 3800475 CTGAACGGAACCATTGTTAGCGATAATTTCATTTTTCATTTCTTCATCCCAAATATTTCT 3800416 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||||| ||| || | | | |||||||||||| || ||||||||||| || | || | Sbjct 3800415 TTCGGTCAAATCTTTTAATAAATGAGGATTAACAACCTGAAATTCTCCCGAAAGAACGCG 3800356 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 | || || |||||||| || || ||||| | || |||||||| || | |||||||| Sbjct 3800355 TCTTGTATAGATATTACTCGTGTAAGGTTCGATAGATTCATTATTCCCAAGTATTTGAGC 3800296 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || || | |||| || | | ||||| | | || Sbjct 3800295 TGTAGAAGCTGTTGGCATTGGAGCAAGTAATAATGAGTTACGGATACCATCTTTTGCTAT 3800236 Query 71289 TTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGG 71327 ||||||||||| || ||||||||||||||| | ||| Sbjct 3800235 TTTATCTTTTAAAGCACTCCAATTCCAAAGATCTGTTGG 3800197 Score = 129 bits (142), Expect = 8e-25 Identities = 218/313 (70%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 || |||||||| || || ||||| || || | | ||||||| ||||||||||||||| Sbjct 3798658 TTACCTGTATTTTTCTTTAGATCAAGAAATTCAAATATATCAGCATGCCACGGTTCCAAA 3798599 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 || ||||| | | || || | || ||||| || ||||| | |||| || || ||| Sbjct 3798598 TACATGGCAAATGCCCCAGGTCTCTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 3798539 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA-TATA 72266 ||||||||||| | ||| |||| | ||||| ||| ||||| || || | || | || Sbjct 3798538 TTATAAACTCTTATCATAGGAACTAAGCCATTCGATATTCCATTTGTGCCAGCGATTCTA 3798479 Query 72267 GCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 | | || | || | |||| | || | ||| || || ||||| |||| | Sbjct 3798478 G-TACCTTTTGCTCTAATAGTATGAACACTCAAACCAATGCCACCTGCAGATTTACTAAC 3798420 Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386 |||||| |||| |||||| |||||||| || || || || ||||| || |||| | || Sbjct 3798419 TAATGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGTTAG 3798360 Query 72387 TAGAAAACAGCTA 72399 || || || ||| Sbjct 3798359 AAGGAAGCAACTA 3798347 Score = 125 bits (138), Expect = 1e-23 Identities = 215/311 (69%), Gaps = 6/311 (2%) Strand=Plus/Minus Query 71575 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATT 71634 ||||||||| ||| ||||||||||||| ||| ||||| |||| | |||| | | Sbjct 3799558 TCAGCTTCTTTAATTGGATAATAATTAAGATCAATAATCTTATCTAAATTTTGGGTAACA 3799499 Query 71635 ACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA---TCTCCCATCTA---TTACAAAC 71688 |||||| || || || | ||| |||| ||| | | | || | | |||||| Sbjct 3799498 ACTTTGGTAACTTCTTTCAATTTTTGAAAGTCATACGTTTTTTTATTGACATTAACAAAC 3799439 Query 71689 ACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGT 71748 | || | || | |||||| | |||||| || || || |||| | | | |||||| Sbjct 3799438 ATATTAACAGCGATAGATGCTAAATTACACACCGCCACTTCATCTGGAGAAGAATATTGC 3799379 Query 71749 ATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTT 71808 | || ||| || || |||||||||| ||||||| || | ||| | |||||| ||| Sbjct 3799378 ACAACTTCGGTACATAGATTACTACTTCTGATGGTACCAAGATTCTTTTGATTTGACTTC 3799319 Query 71809 TTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATA 71868 ||||||| ||| |||||||| || | |||||||||||||||| || || | || | Sbjct 3799318 CTGTTACAATGATCTTTATAAAGCATGTAAGGAGTACCAGTTTCAACTTGCGACTTTAAA 3799259 Query 71869 ATCGCTTTCCA 71879 || || |||| Sbjct 3799258 ATTGCAGTCCA 3799248 Score = 107 bits (118), Expect = 3e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 72520 ACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 72579 ||||| || | ||| | |||||||||||| |||||||| | || ||| ||||| || Sbjct 3798079 ACCGCAACTCTCATAAGCATATGCTGAGGCCTTTCAACTACTTTTCCATTAATTTTTAAT 3798020 Query 72580 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 72639 ||||| | ||||||| |||||||| |||||||| || || ||| |||| |||||| Sbjct 3798019 AAGTAACTTCTTTCCAATGTTTTAAATCCAAAATAATTATAACCAAAATCTCTATCGTAA 3797960 Query 72640 ATAATAACCGAATTGAGTTTATCCTTATATTT 72671 ||||| | ||||| | |||||| || | ||| Sbjct 3797959 ATAATGGCAGAATTAATTTTATCTTTGTGTTT 3797928 Score = 93.3 bits (102), Expect = 6e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 71391 GTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGT 71450 |||| ||||| | || ||||| ||| ||||| ||||| || ||||||||||| | || Sbjct 3799818 GTATTTTCCTTTCTCTTTGGCTATTTCGCAACTAGCCTCCAAAGCTCCATAATACAAAGT 3799759 Query 71451 TTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAG 71510 ||| ||||| | |||| || | || ||||| ||| |||||||||||| | | Sbjct 3799758 TTCAAAAATTTGAATATTAAGTTTCTGCGCTTCTTCGCTTTCAAATGGATAACCCATCAA 3799699 Query 71511 AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGAT 71549 | ||| || || |||||||| |||| |||||||| || Sbjct 3799698 CAAAAATGCATCAGCTAATCCCTGAATTCCAATACCTAT 3799660 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 72763 CTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATG 72822 ||||| | |||||| ||||| || |||| ||| || || |||||||| || |||| ||| Sbjct 3797712 CTAAACACTTTTTTGGTTTCTTTATGTAAATTAGAAACTGCTATTCTTGCTGCTAATATG 3797653 Query 72823 GCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAAT 72882 |||||||||| ||||| || || || || | ||||||| || | | || | | Sbjct 3797652 GCATAATCTGCATGTTTCGTTGTCATTGTTGCAGAAGTTTCTGCAGCTAAGTTATCAAGT 3797593 Query 72883 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAAC 72920 || || ||||| |||||| ||| | || | |||||| Sbjct 3797592 TCCACAGTTGTGACTCCAGAATAAAGACCATTGATAAC 3797555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671118587637320