Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 seq34 87.8 2e-12 >seq2 Length=17806784 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||||| | ||||| |||| ||||| || ||||| || ||||| || Sbjct 12206951 CCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCAGAT 12207010 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || |||||||| || |||||| |||||||||| ||||| || || || Sbjct 12207011 AAAGTACGTCCA-TCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGG 12207069 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||||||||| || ||| || || | | ||| | ||||||| | ||| || Sbjct 12207070 AATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGAC 12207129 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 12207130 TTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207177 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | |||| ||| ||||||| || || || || || || ||||| ||| Sbjct 12207178 GCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207237 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || | || | || || | ||| |||||||| | |||||||| ||||| || || | Sbjct 12207238 CAGAGTACGTCCA-TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGG 12207296 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| ||| || || | | ||| | ||||||| | ||| | Sbjct 12207297 GAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207356 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 12207357 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207405 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | |||| ||| ||||||| || || || || || || ||||| ||| Sbjct 12207634 GCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207693 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || | || | || || | ||| |||||||| | |||||||| ||||| || || | Sbjct 12207694 CAGAGTACGTCCA-TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGG 12207752 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| ||| || || | | ||| | ||||||| | ||| | Sbjct 12207753 GAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207812 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 12207813 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207861 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | ||| ||||| ||||| || |||||||| | ||| || ||||| Sbjct 3492050 AACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTC 3491991 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||||||||||| |||| |||||||||||||| || || || |||||||| || Sbjct 3491990 TAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTG 3491931 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||| ||| | | || | ||||| | | ||||| |||| ||| | || || Sbjct 3491930 GATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTT 3491871 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| ||||| ||||| || ||||| Sbjct 3491870 ACCAGTCAAGGTTTTAACGAAAATCTGCAT 3491841 Score = 113 bits (124), Expect = 5e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | ||| ||||| ||||| || |||||||| | ||| || ||||| Sbjct 3493165 AACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCTGAAAGTGTTCTACCATCTTC 3493106 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||||||||||| |||| |||||||||||||| || || || |||||||| || Sbjct 3493105 TAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGGGGAATTCCTTCTTTATCCTG 3493046 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||| ||| | | || | ||||| | | ||||| |||| ||| | || || Sbjct 3493045 GATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCTACCTCAAGAGTAATAGTTTT 3492986 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| ||||| ||||| || ||||| Sbjct 3492985 ACCAGTCAAGGTTTTAACGAAAATCTGCAT 3492956 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | | || ||| ||||||| || || || || || || ||||| ||| Sbjct 12207406 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207465 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || | || | || || | ||| |||||||| | |||||||| ||||| || || | Sbjct 12207466 CAGAGTACGTCCA-TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGG 12207524 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| ||| || || | | ||| | ||||||| | ||| | Sbjct 12207525 GAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12207584 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 12207585 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207633 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | | || ||| ||||||| || || || || || || ||||| ||| Sbjct 12207862 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12207921 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || | || | || || | ||| |||||||| | |||||||| ||||| || || | Sbjct 12207922 CAGAGTACGTCCA-TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGG 12207980 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| ||| || || | | ||| | ||||||| | ||| | Sbjct 12207981 GAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208040 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 12208041 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208089 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | | || ||| ||||||| || || || || || || ||||| ||| Sbjct 12208090 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208149 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || | || | || || | ||| |||||||| | |||||||| ||||| || || | Sbjct 12208150 CAGAGTACGTCCA-TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGG 12208208 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| ||| || || | | ||| | ||||||| | ||| | Sbjct 12208209 GAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208268 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 12208269 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208317 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | | || ||| ||||||| || || || || || || ||||| ||| Sbjct 12208318 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208377 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || | || | || || | ||| |||||||| | |||||||| ||||| || || | Sbjct 12208378 CAGAGTACGTCCA-TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGG 12208436 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| ||| || || | | ||| | ||||||| | ||| | Sbjct 12208437 GAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208496 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 12208497 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208545 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | | || ||| ||||||| || || || || || || ||||| ||| Sbjct 12208546 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208605 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || | || | || || | ||| |||||||| | |||||||| ||||| || || | Sbjct 12208606 CAGAGTACGTCCA-TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGG 12208664 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| ||| || || | | ||| | ||||||| | ||| | Sbjct 12208665 GAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208724 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 12208725 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208773 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | | || ||| ||||||| || || || || || || ||||| ||| Sbjct 12208774 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12208833 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || | || | || || | ||| |||||||| | |||||||| ||||| || || | Sbjct 12208834 CAGAGTACGTCCA-TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGG 12208892 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| ||| || || | | ||| | ||||||| | ||| | Sbjct 12208893 GAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCGA 12208952 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 12208953 CTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12209001 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||| | || ||||||||||| ||||| || ||| | ||| || ||||| Sbjct 3493393 AACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGATAATGTTCTTCCATCTTC 3493334 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||||||| ||| | || |||||||||||||| || || || |||||||| || Sbjct 3493333 CAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTG 3493274 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| ||| | | ||| | || || | | ||| ||||| | || | || || Sbjct 3493273 AATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCCAGTGTAATAGTTTT 3493214 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||||||||| || || |||||||| Sbjct 3493213 ACCTGTCAATGTTTTGACAAAAATTTGCAT 3493184 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||||| | | || ||| ||||||| || || || || || || ||||| ||| Sbjct 12209002 GCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGA 12209061 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || || | || | || || | ||| |||||||| | |||||||| ||||| || || | Sbjct 12209062 CAGAGTACGTCCA-TCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGG 12209120 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | |||||||||||||| || || || | | ||| | ||||| | | ||| | Sbjct 12209121 GAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCTGAAGCTTCGA 12209180 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| ||| | ||||| || |||||||| ||||| || || ||||| Sbjct 12209181 CTTCAAGAGTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 12209229 >seq34 Length=1613596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 |||||| |||||||| |||||| | || | | ||| ||||| ||||| ||||||||||| Sbjct 772976 GTCTTCAAGTTGTTTTCCAGCAAAAATTAATCTTTGTTGATCTGGAGGGATGCCTTCTTT 773035 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || || || ||| | | ||| | ||| || | | ||||||||| | || | Sbjct 773036 ATCTTGTATCTTAGCTTTCACATTTTCAATCGTATCTGATGCTTCTACTTCTAGGGTAAT 773095 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || || || ||||| ||||| |||||||| Sbjct 773096 AGTCTTCCCTGTTAAAGTTTTAACGAAGATTTGCAT 773131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506998828320240