Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq64 1310 0.0 >seq64 Length=39090 Score = 1310 bits (1452), Expect = 0.0 Identities = 1083/1313 (82%), Gaps = 12/1313 (1%) Strand=Plus/Minus Query 56237 TGAACCGCCCCGGTTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 56296 ||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||| || | Sbjct 11073 TGAACCGCCCCGGTTTTCCTGGATAGTATTTTAGCTGGGAACTCAGGCTGCCAGCTCCTT 11014 Query 56297 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 56356 || ||||||||||||||||| || | ||| ||||||||||| || |||| |||||||| Sbjct 11013 ATTCCCGATGGAAGCATAATATGCCTGTTCGGCTTCTGCCGGTGGGATATGCCCCAGCCT 10954 Query 56357 TCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTC 56416 | |||||| || || ||||| ||||||||||||||||| ||||| ||||| |||||||| Sbjct 10953 TTCCAGCAGCCGGCGGTTGTTGTACCAGTCCACCCACGTCAGTGTCGCCAGCTCCACTTC 10894 Query 56417 TGCACGGTTTTTCCAGCTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCT 56476 || ||| |||||||||| ||||| ||||| ||||||||||||||||| || |||||||| Sbjct 10893 GGCGCGGGTTTTCCAGCTTTTACGATGTATAACCTCCGCTTTGTAAAGTCCGTTGATGCT 10834 Query 56477 CTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGC 56536 ||| ||||| ||||||||||| |||||||| || || || ||||||||||| | || || Sbjct 10833 CTCTGCCATTGCGTTGTCATATGAGTCGCCGGTGCTGCCCGTTGATGCCAGCAGCCCTGC 10774 Query 56537 TTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATG 56596 || || || || | ||| || ||||| |||||||||||||||||||||||||||||||| Sbjct 10773 GTCCTTAAGCCGTTGCGTGTACGCCAGCGACACATACTGAGAGCCTTTATCGCTGTGATG 10714 Query 56597 GATGGTGCCAGACGG-ACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATG 56655 |||||| || ||||| ||| | ||||||||| ||||||||| |||||||||| ||||| | Sbjct 10713 GATGGTCCC-GACGGGACGTCTGGCCCACAATGCCTGCTCCGGCGCATCCAGTACGAACG 10655 Query 56656 TCGTTTCCATAGACGATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGA 56715 | |||||||| ||||||||||||||||| ||||||||| ||||| |||||||| |||| Sbjct 10654 TTGTTTCCATCGACGATGAGACCCGCCATCCCACGATGCGACCGGCGAACACATCGATGA 10595 Query 56716 TAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACA 56775 | ||||||||||| ||||||||||| | |||||||| | ||||||||||||||||||| Sbjct 10594 TGAACGCCACATACGCGAAGCCCTGCAAGGTGCTGACACAGGTAAAATCAGCCACCCACA 10535 Query 56776 GCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTACGCGGTCGCCTGCGGCAACGGCTT 56835 |||||||||| ||||| ||||||||||| ||||| || ||||| |||| ||| | ||| Sbjct 10534 GCTGGTCAGGCCGTTCGGCCACGAACTGGCGGTTCACACGGTCATCTGCAGCAGCCTCTT 10475 Query 56836 TCCGGCTGATGGTCGTACGGACCTTTTTACCCCGGAGAACACCGGCAAGTCCCATAACCG 56895 | ||||||| ||| || || |||||||| |||||| | || || || | ||||| || Sbjct 10474 TACGGCTGACGGTGGTTCGTACCTTTTTGCCCCGGCGTACCCCTGCCCGCCCCATCGCCT 10415 Query 56896 CCATGAGACGTGCCACTGTACATCTGGCCACCCTGATTCCTTCCCGTAACAACTGACGCC 56955 ||| || ||| |||| |||||||||||| | ||||| |||||| | ||||||||||| Sbjct 10414 TCATCAGCCGTTCCACGGTACATCTGGCCGCGCTGATGTGTTCCCGGAGCAACTGACGCC 10355 Query 56956 AGACTTTACGCACACCGTACAC-CTGATGATTTTCATCGTATACGCGCTGTATCTCTCTC 57014 |||| || || || || ||||| ||| || |||||||| || || ||||||||||| | Sbjct 10354 AGACCTTGCGGACGCCATACACACTG-TGGTTTTCATCATACACACGCTGTATCTCCGTT 10296 Query 57015 TTCAGCCAGTCGTCGTGCTGCGCACGGGCACTGCGTTTATCCGGATG-ATGTCGCTGTTG 57073 |||||| || ||| |||| |||| | ||||| | |||||||| ||| || || || Sbjct 10295 TTCAGCAGGTGGTCACGCTGTTCACGCGGGCTGCGCCTGTCCGGATGCATG-CGGTGGTG 10237 Query 57074 CTGACAATGGTAATACGTTGACGGGGCAATATGCAGTTCGCTGCATACCGGTCCGACCCC 57133 |||| | ||||||| || |||||||| |||| |||||| |||||||||||||||||| Sbjct 10236 CTGATACCGGTAATATGTCGACGGGGCGATATCCAGTTCCTGGCATACCGGTCCGACCCC 10177 Query 57134 GTACTGCTCACGCAGCTTATCCAGCAGTGGCATCATTTTTTCCAGAGGCGGTCGAACTCC 57193 | || | |||||| |||||| ||| || |||||||||||||||||||||||||| Sbjct 10176 ATGCTCATTACGCAGGGTATCCACCAGAGGGGCTATTTTTTCCAGAGGCGGTCGAACTCC 10117 Query 57194 GCCTTCGCAAAATAAGCGGAAGCCTGGCGAAGGATATCGTTACTGCGGCGCAGTTCACGA 57253 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| || Sbjct 10116 GCCTTCGCAAAATAAGCGGAAGCCTGTCGCAGGATATCGTTACTGCGGCGCAGTTCGCGG 10057 Query 57254 TTTTCACGTTCCAGCTCTTTCAGACGCTGACGTTCAGCGCTGGTGAGCCCACCATCACCG 57313 ||||||||||||||||| || |||||||| ||||||| | ||||||| || || ||| Sbjct 10056 TTTTCACGTTCCAGCTCCTTGAGACGCTGGCGTTCAGTGGTGGTGAGTCCGCCGTCA--- 10000 Query 57314 CCCCCGGTATCCCGCTCATGCTGGCGAACCCAGACACGCAGAGTCTCCGGCGTACAGCCA 57373 |||| ||| || ||||||||||||| |||| || || |||||||| |||||||| Sbjct 9999 ---CCGGCATCACGTTCATGCTGGCGAAGCCAGGTGCGAAGCGTCTCCGGTGTACAGCCG 9943 Query 57374 ATCTTTGGGGCAATGGAACAAATTGCCGCCCACTGTGAGTCATATTCATCCTGACTTTCC 57433 || || ||||| | || | || || ||||| ||||||||||| || | ||| | ||| Sbjct 9942 ATTTTGGGGGCGACAGAGCTGATGGCAGCCCATTGTGAGTCATAGTCGTTCTGGCCTTCG 9883 Query 57434 AGAACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATC 57493 | ||||| ||||| |||||||||||||| || |||||||| || ||||||||||||||| Sbjct 9882 ATAACCAGACGAACGGCCCGCTGACGGACCTCAGGGGAAAAGCGCGTATTTTTAGTCATC 9823 Query 57494 CTGTTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCA 57546 |||||||||||| ||||| ||||||||||||||||||| ||||||||||||| Sbjct 9822 CTGTTTACCTCTCTCTCAAAGAGTTTAGTCTCCAGGATTCCCGGGGCGGTTCA 9770 Score = 504 bits (558), Expect = 3e-138 Identities = 431/531 (81%), Gaps = 11/531 (2%) Strand=Plus/Minus Query 56272 TGTGAACTCAGGCTGCCAGATCATCGTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTT 56331 || |||||||||||||||||||| ||||| | |||||||| ||||| || |||||||| Sbjct 38559 TGGGAACTCAGGCTGCCAGATCACCGTTTACAATGGAAGCGTAATATGCCAGTTCTGCTT 38500 Query 56332 CTGCCGGAGGAGTATGGCCCAGCCTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCC 56391 |||| || || |||| ||| ||||| |||||| || |||||||| ||||||||||||| Sbjct 38499 CTGCTGGCGGGATATGCCCCGGCCTTTCCAGCAGCCGGCGATTGTTGTACCAGTCCACCC 38440 Query 56392 ACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTTTTCCAGCTCTTACGGTGTATTACCT 56451 ||| |||| |||||||| || ||||||||||| |||| |||||||| |||| Sbjct 38439 ACG---------CCAGCTCCACTTCGGCGCGGTTTTTCCATTTCTTGCGGTGTATCACCT 38389 Query 56452 CCGCTTTGTAAAGACCATTGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTAC 56511 | ||||| ||||| |||||||| ||||| ||||| |||||||| || ||||||||||| | Sbjct 38388 CTGCTTTATAAAGGCCATTGATACTCTCTGCCATTGCGTTGTCGTATGAGTCGCCTGTGC 38329 Query 56512 TCCCTGTTGATGCCAGTAATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACAT 56571 |||| ||||||||||||| || || || || || || | ||| || ||||| ||||||| Sbjct 38328 TCCC-GTTGATGCCAGTAGCCCTGCGTCCTTAAGCCGTTGCGTGTACGCCAGCGACACAT 38270 Query 56572 ACTGAGAGCCTTTATCGCTGTGATGGATGGTGCCAGACGGACGACGGGCCCACAACGCCT 56631 |||| ||||||||||| ||||||||| || || | ||| || |||||||||||||||| Sbjct 38269 ACTGCGAGCCTTTATCTGAGTGATGGATAGTTCCTGCCGGCCGTCGGGCCCACAACGCCT 38210 Query 56632 GCTCCAGCGCATCCAGCACGAATGTCGTTTCCATAGACGATGAGACCCGCCACCCCACGA 56691 ||||| |||| ||||| ||||| ||||||||||| || || || ||||| || ||||||| Sbjct 38209 GCTCCGGCGCGTCCAGTACGAACGTCGTTTCCATCGATGACGACACCCG-CAGCCCACGA 38151 Query 56692 TGTATCCGGCAAACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGA 56751 | || || ||||| || ||||| ||||||||||| | ||||||||||| ||||||| Sbjct 38150 TACGACCCGCGAACACGTCGATGATGAACGCCACATAAGCAAAGCCCTGCCAGGTGCTGA 38091 Query 56752 CGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACT 56802 |||| || || || ||||||||||||||||| || ||| | ||||||||| Sbjct 38090 CGTACGTGAAGTCTGCCACCCACAGCTGGTCTGGCCGTCCAACCACGAACT 38040 Score = 161 bits (178), Expect = 4e-35 Identities = 122/144 (85%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 56237 TGAACCGCCCCGGTTTTCCTGGAGAGTGTTTTATCTGTGAACTCAGGCTGCCAGATCATC 56296 ||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||| || | Sbjct 36682 TGAACCGCCCCGGTTTTCCTGGATAGTATTTTAGCTGGGAACTCAGGCTGCCAGCTCCTT 36623 Query 56297 GTTTCCGATGGAAGCATAATAAGCTTTTTCTGCTTCTGCCGGAGGAGTATGGCCCAGCCT 56356 || ||||||||||||||||| || | ||| ||||||||||| || |||| |||||||| Sbjct 36622 ATTCCCGATGGAAGCATAATATGCCTGTTCGGCTTCTGCCGGTGGGATATGCCCCAGCCT 36563 Query 56357 TCCCAGCAATCGTCGATTGTTATA 56380 | |||||| || |||||||| || Sbjct 36562 TTCCAGCAGCCGGCGATTGTTGTA 36539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200528395060059