Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 >seq2 Length=17806784 Score = 111 bits (122), Expect = 1e-19 Identities = 174/247 (70%), Gaps = 8/247 (3%) Strand=Plus/Plus Query 33129 ATATCCAATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTG 33186 |||| ||||| || || ||||| || || | ||| || || | || ||||| ||||| Sbjct 12206935 ATATTAAATCTACATTCCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTG 12206994 Query 33187 TATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACG 33246 |||||||| ||||| ||| | || || || | |||||| ||| ||| || | ||| Sbjct 12206995 GATATTGTAGTCAGATAAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACG 12207054 Query 33247 TTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAAT 33303 |||||||| | ||| ||||||||||| || |||| ||| || || ||| || Sbjct 12207055 CTGCTGGTCTGGGGGAATGCCTTCTTTATCCTGAATCTTAGCC---TTGACATTTTCTAT 12207111 Query 33304 CGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAAT 33363 ||||| | || || || ||||| || ||||| || || | || || |||||||| Sbjct 12207112 TGTGTCCGAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAAT 12207171 Query 33364 TTGCATG 33370 ||||||| Sbjct 12207172 TTGCATG 12207178 Score = 107 bits (118), Expect = 1e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | |||| |||||||| | || ||||| || || |||||||| || ||| Sbjct 12207179 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207238 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || || ||||||||||| ||| || || | ||| |||||||| | ||| Sbjct 12207239 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207298 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || |||| ||| || || ||| || ||||| | || Sbjct 12207299 ATGCCTTCTTTGTCCTGAATCTTAGCC---TTGACATTTTCTATTGTGTCCGAAGCTTCG 12207355 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || ||||| || || | || || ||||||||||||||| Sbjct 12207356 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207406 Score = 107 bits (118), Expect = 1e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | |||| |||||||| | || ||||| || || |||||||| || ||| Sbjct 12207635 CCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207694 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || || ||||||||||| ||| || || | ||| |||||||| | ||| Sbjct 12207695 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207754 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || |||| ||| || || ||| || ||||| | || Sbjct 12207755 ATGCCTTCTTTGTCCTGAATCTTAGCC---TTGACATTTTCTATTGTGTCCGAAGCTTCG 12207811 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || ||||| || || | || || ||||||||||||||| Sbjct 12207812 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207862 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | | || |||||||| | || ||||| || || |||||||| || ||| Sbjct 12207407 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207466 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || || ||||||||||| ||| || || | ||| |||||||| | ||| Sbjct 12207467 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207526 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || |||| ||| || || ||| || ||||| | || Sbjct 12207527 ATGCCTTCTTTGTCCTGAATCTTAGCC---TTGACATTTTCTATTGTGTCCGAAGCTTCG 12207583 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || ||||| || || | || || ||||||||||||||| Sbjct 12207584 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207634 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | | || |||||||| | || ||||| || || |||||||| || ||| Sbjct 12207863 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12207922 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || || ||||||||||| ||| || || | ||| |||||||| | ||| Sbjct 12207923 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12207982 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || |||| ||| || || ||| || ||||| | || Sbjct 12207983 ATGCCTTCTTTGTCCTGAATCTTAGCC---TTGACATTTTCTATTGTGTCCGAAGCTTCG 12208039 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || ||||| || || | || || ||||||||||||||| Sbjct 12208040 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208090 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | | || |||||||| | || ||||| || || |||||||| || ||| Sbjct 12208091 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208150 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || || ||||||||||| ||| || || | ||| |||||||| | ||| Sbjct 12208151 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208210 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || |||| ||| || || ||| || ||||| | || Sbjct 12208211 ATGCCTTCTTTGTCCTGAATCTTAGCC---TTGACATTTTCTATTGTGTCCGAAGCTTCG 12208267 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || ||||| || || | || || ||||||||||||||| Sbjct 12208268 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208318 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | | || |||||||| | || ||||| || || |||||||| || ||| Sbjct 12208319 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208378 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || || ||||||||||| ||| || || | ||| |||||||| | ||| Sbjct 12208379 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208438 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || |||| ||| || || ||| || ||||| | || Sbjct 12208439 ATGCCTTCTTTGTCCTGAATCTTAGCC---TTGACATTTTCTATTGTGTCCGAAGCTTCG 12208495 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || ||||| || || | || || ||||||||||||||| Sbjct 12208496 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208546 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | | || |||||||| | || ||||| || || |||||||| || ||| Sbjct 12208547 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208606 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || || ||||||||||| ||| || || | ||| |||||||| | ||| Sbjct 12208607 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208666 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || |||| ||| || || ||| || ||||| | || Sbjct 12208667 ATGCCTTCTTTGTCCTGAATCTTAGCC---TTGACATTTTCTATTGTGTCCGAAGCTTCG 12208723 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || ||||| || || | || || ||||||||||||||| Sbjct 12208724 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208774 Score = 102 bits (112), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | | || |||||||| | || ||||| || || |||||||| || ||| Sbjct 12208775 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12208834 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || || ||||||||||| ||| || || | ||| |||||||| | ||| Sbjct 12208835 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12208894 Query 33263 ATGCCTTCTTTTTCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || |||| ||| || || ||| || ||||| | || Sbjct 12208895 ATGCCTTCTTTGTCCTGAATCTTAGCC---TTGACATTTTCTATTGTGTCCGAAGCTTCG 12208951 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| || ||||| || || | || || ||||||||||||||| Sbjct 12208952 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12209002 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/234 (68%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| | | || |||||||| | || ||||| || || |||||||| || ||| Sbjct 12209003 CCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCGGAC 12209062 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || || ||||||||||| ||| || || | ||| |||||||| | ||| Sbjct 12209063 AGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGGGGA 12209122 Query 33263 ATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGA 33319 ||||||||||| || | | | ||| || || ||| || ||||| | || Sbjct 12209123 ATGCCTTCTTTGTCCTGGATCTTAGCC---TTGACATTTTCTATTGTGTCTGAAGCTTCG 12209179 Query 33320 ACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 || || ||||| || || || || || | || ||||| || || |||||| || Sbjct 12209180 ACTTCAAGAGTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCATGATT 12209233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318768054304386