Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq2 122 7e-23 >seq2 Length=17806784 Score = 122 bits (134), Expect = 7e-23 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| || || ||||||||||| ||||| || ||| | ||| | |||||||||||| Sbjct 3493387 ATGGAGCGTTGATTCTTTTTGGATGTTATAGTCGGATAATGTTCTTCCATCTTCCAATTG 3493328 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 ||| || ||| |||| || | || ||||| || | |||||||| || |||||| Sbjct 3493327 TTTACCGGCAAAAATGAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTT 3493268 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 |||||| | ||| || |||| || ||| ||||| ||||| ||||| || || Sbjct 3493267 AGCTTTCACATTTTCAATAGTATCGGAAGCTTCAACTTCCAGTGTAATAGTTTTACCTGT 3493208 Query 20185 CAACGTTTTGACAAAAATTTGCATT 20209 ||| ||||||||||||||||||||| Sbjct 3493207 CAATGTTTTGACAAAAATTTGCATT 3493183 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 20053 ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTT 20112 ||||||||||||||| || ||| |||| || | |||||||| || | |||||||| Sbjct 3492224 ATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 3492165 Query 20113 GTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAAT 20172 ||| || || ||| || | ||| || ||| || ||| ||||| || || Sbjct 3492164 GTCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCCAACGTGAT 3492105 Query 20173 GGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||||||||| || || ||||| ||||||||||||||| Sbjct 3492104 GGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419574635592417