Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq34 192 1e-43 seq2 188 2e-42 seq3 91.5 3e-13 >seq34 Length=1613596 Score = 192 bits (212), Expect = 1e-43 Identities = 157/191 (82%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 104370 CTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAA 104429 |||| ||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||| Sbjct 772942 CTTTTTGAATATTATAGTCAGATAAAGTACGACCGTCTTCAAGTTGTTTTCCAGCAAAAA 773001 Query 104430 TTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTT 104489 ||| || |||||||| ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 773002 TTAATCTTTGTTGATCTGGAGGGATGCCTTCTTTATCTTGTATCTTAGCTTTCACATTTT 773061 Query 104490 CTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | | ||||| | |||||| ||||| ||||||||||| || || | ||||| || | Sbjct 773062 CAATCGTATCTGATGCTTCTACTTCTAGGGTAATAGTCTTCCCTGTTAAAGTTTTAACGA 773121 Query 104550 ATATCTGCATT 104560 | || |||||| Sbjct 773122 AGATTTGCATT 773132 >seq2 Length=17806784 Score = 188 bits (208), Expect = 2e-42 Identities = 182/234 (78%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || ||||| ||||| ||||| || |||||||| || || Sbjct 3492070 ATTCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCT 3492011 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||| ||||||| |||||| |||||||| ||||| | || ||||| || Sbjct 3492010 GAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGG 3491951 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||||||||| || || ||||| ||||| || | ||| || | ||| Sbjct 3491950 GGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCT 3491891 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || |||||||| |||||||| | ||||| || || |||||||| ||| Sbjct 3491890 ACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCATCTTG 3491837 Score = 188 bits (208), Expect = 2e-42 Identities = 182/234 (78%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || ||||| ||||| ||||| || |||||||| || || Sbjct 3493185 ATTCCACCACGAAGGCGAAGAACAAGATGCAATGTTGATTCCTTTTGAATATTGTAATCT 3493126 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||| ||||||| |||||| |||||||| ||||| | || ||||| || Sbjct 3493125 GAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACGTTGCTGATCTGGG 3493066 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||||||||| || || ||||| ||||| || | ||| || | ||| Sbjct 3493065 GGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGTGTCTGATGCCTCT 3493006 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || |||||||| |||||||| | ||||| || || |||||||| ||| Sbjct 3493005 ACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTGCATCTTG 3492952 Score = 183 bits (202), Expect = 7e-41 Identities = 179/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || ||||| | || |||||||| || || |||||||| Sbjct 3493413 ATTCCACCACGAAGGCGAAGAACAAGATGGAGCGTTGATTCTTTTTGGATGTTATAGTCG 3493354 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||| || ||||| | |||||| || |||||||| || | || ||||| || Sbjct 3493353 GATAATGTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGCTGATCTGGT 3493294 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||||||||| ||||| || ||||| |||||||| | |||||| || ||| Sbjct 3493293 GGAATTCCTTCTTTATCTTGAATTTTAGCTTTCACATTTTCAATAGTATCGGAAGCTTCA 3493234 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || ||||||||||| ||||| || | |||||| ||||| || |||||| Sbjct 3493233 ACTTCCAGTGTAATAGTTTTACCTGTCAATGTTTTGACAAAAATTTGCATT 3493183 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| ||||| | | ||| |||| || | ||||| || || || ||||| |||||| Sbjct 12206948 ATTCCACCTCTCAAACGAAGCACTAAGTGAAGCGTAGACTCCTTTTGGATATTGTAGTCA 12207007 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||| | || || || ||||| || |||||||| || || | ||| || || || Sbjct 12207008 GATAAAGTACGTCCATCCTCGAGTTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGG 12207067 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||||||||||||||| || || |||||||||| || || || ||| Sbjct 12207068 GGAATGCCTTCTTTATCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12207127 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || || | ||| || || || || ||||| Sbjct 12207128 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207177 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || || || | ||| | || || || ||||| ||||| ||||| Sbjct 12207404 ATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCG 12207463 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || | ||| || ||||| ||||| || | ||| || ||||| Sbjct 12207464 GACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGG 12207523 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||||||||| || || |||||||||| || || || ||| Sbjct 12207524 GGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12207583 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || || | ||| || || || || ||||| Sbjct 12207584 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207633 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || || || | ||| | || || || ||||| ||||| ||||| Sbjct 12207860 ATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCG 12207919 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || | ||| || ||||| ||||| || | ||| || ||||| Sbjct 12207920 GACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGG 12207979 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||||||||| || || |||||||||| || || || ||| Sbjct 12207980 GGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12208039 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || || | ||| || || || || ||||| Sbjct 12208040 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208089 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || || || | ||| | || || || ||||| ||||| ||||| Sbjct 12208088 ATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCG 12208147 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || | ||| || ||||| ||||| || | ||| || ||||| Sbjct 12208148 GACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGG 12208207 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||||||||| || || |||||||||| || || || ||| Sbjct 12208208 GGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12208267 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || || | ||| || || || || ||||| Sbjct 12208268 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208317 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || || || | ||| | || || || ||||| ||||| ||||| Sbjct 12208316 ATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCG 12208375 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || | ||| || ||||| ||||| || | ||| || ||||| Sbjct 12208376 GACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGG 12208435 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||||||||| || || |||||||||| || || || ||| Sbjct 12208436 GGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12208495 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || || | ||| || || || || ||||| Sbjct 12208496 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208545 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || || || | ||| | || || || ||||| ||||| ||||| Sbjct 12208544 ATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCG 12208603 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || | ||| || ||||| ||||| || | ||| || ||||| Sbjct 12208604 GACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGG 12208663 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||||||||| || || |||||||||| || || || ||| Sbjct 12208664 GGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12208723 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || || | ||| || || || || ||||| Sbjct 12208724 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12208773 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || || || | ||| | || || || ||||| ||||| ||||| Sbjct 12208772 ATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCG 12208831 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || | ||| || ||||| ||||| || | ||| || ||||| Sbjct 12208832 GACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGG 12208891 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||||||||| || || |||||||||| || || || ||| Sbjct 12208892 GGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12208951 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || || | ||| || || || || ||||| Sbjct 12208952 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12209001 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | ||| | || || || ||||| ||||| ||||| Sbjct 12207176 ATGCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCG 12207235 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || | ||| || ||||| ||||| || | ||| || ||||| Sbjct 12207236 GACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGG 12207295 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||||||||| || || |||||||||| || || || ||| Sbjct 12207296 GGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12207355 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || || | ||| || || || || ||||| Sbjct 12207356 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207405 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || | ||| | || || || ||||| ||||| ||||| Sbjct 12207632 ATGCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATATTGTAGTCG 12207691 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || || || | ||| || ||||| ||||| || | ||| || ||||| Sbjct 12207692 GACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGCTGGTCAGGG 12207751 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||||||||| || || |||||||||| || || || ||| Sbjct 12207752 GGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCCGAAGCTTCG 12207811 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || || | ||| || || || || ||||| Sbjct 12207812 ACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCAT 12207861 Score = 118 bits (130), Expect = 2e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 104396 GTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATT 104455 ||||| || ||||| | |||||| || |||||||| || | |||||||| || || ||| Sbjct 3492232 GTTCTTCCATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATT 3492173 Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 |||||||| || || ||||| ||||| |||||||| | ||||| || ||| || || Sbjct 3492172 CCTTCTTTGTCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCC 3492113 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 | || || || || ||||| | ||||| ||||| || |||||| Sbjct 3492112 AACGTGATGGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCATT 3492068 >seq3 Length=17417032 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 238766 AGGTTGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATT 238825 |||||||||||||||||||||||| | || ||| | |||| ||| |||| || || Sbjct 15630181 AGGTTGTATGTGGTCAATATGTGGTGTGCATGATCATGGATGGAAAGAGCGACCAATTTT 15630122 Query 238826 TGGAAAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCTTT 238885 ||| ||| || | ||||||||||| |||| | | | ||||||||||||||| || || Sbjct 15630121 TGGTAAAATTCGTTACATGAATTACAAAGGCTGTGAAAGAAAATTTGATGTAAAGGCGTT 15630062 Query 238886 TAT 238888 || Sbjct 15630061 CAT 15630059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151362153618556