Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq64 432 9e-117 >seq64 Length=39090 Score = 432 bits (478), Expect = 9e-117 Identities = 738/1053 (70%), Gaps = 23/1053 (2%) Strand=Plus/Minus Query 33088 TTCCATTGGGCTGTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTA 33147 || || |||| ||||||||||||||| || ||||| ||||| || || | ||| | | Sbjct 36297 TTTCACTGGGAGGTTATCCCAGCAGTTGCCCCGCCGACTCATGCTTTGCTTTATCCGACA 36238 Query 33148 TCGCCACAATAACTGCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAA 33207 ||||||| | ||||| | | | ||| |||||||| || ||||| || |||||||| Sbjct 36237 GCGCCACAGTGCTTGCCGATATTTGCGGCTGGTATAATGGCTACCCTGGTCACTGTGGAA 36178 Query 33208 CATCAC-CCCGCCGGGCTTACCACGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGA 33266 ||| || || | |||| ||| || | ||||| ||||| | || |||||| | || | Sbjct 36177 CATTACGCCTGTTGGGC-GACCTCGCATCTCCCAGGCCATCTGCAACGCTTTGACCGTCA 36119 Query 33267 GCCTGC--TGTCCGGCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTC 33324 | ||| ||||||| | ||||||| |||||||||| ||||| | |||||||| || Sbjct 36118 G--TGCCGAGTCCGGCAACGTCGACATGACCCAGCCCACCGGTTTACGGGCGAACAGATC 36061 Query 33325 GAGAACAACGGCGAGGTACGCCCAGCGCTTACCCGTCCAGATATAGGTCACATCACCGCA 33384 || || || || || || ||||||| || || ||||||||| |||||||||| || || Sbjct 36060 CAGCACCACCGCCAGATAAGCCCAGCATTTGCCTGTCCAGATACAGGTCACATCGCCACA 36001 Query 33385 CCACACCTGATTTGGCTCGGTCACGGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCAAC 33444 ||| ||||| | ||| || || || |||||||| | | || | || | || |||| Sbjct 36000 CCAGACCTGGTCTGGTTCTGTGACCGCGAACTGGCGGTTGAGATGATTCTGTATTTCAAC 35941 Query 33445 ATGTTCATGACCACCACGTTTATACCGGTGAGTCGGCTGCTGACAGCTGACCAGCCCCAG 33504 || || | ||| ||||| | ||| ||| || || | |||||||| | | ||||| Sbjct 35940 GTGCTCGTTACCGCCACGCCTGTACTTGTGGGTGGGTACCAGACAGCTGGCGATGCCCAG 35881 Query 33505 CTCTTTCATGAGCCTGCCAGCAAGCCAGCGTCCCATCTGGTAGCCTCT---CCGGGTTGC 33561 ||| |||| ||| | || || |||||||| ||||| | | || | |||| | | Sbjct 35880 CTCAGTCATCAGCTTACCGGCCAGCCAGCGCCCCATTTTGACACCGGTGTCCCGGATAAC 35821 Query 33562 CATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTGGCTG--ATGCCATGTAGCTCAAGT 33619 || | |||||||||| || ||||| ||||| ||| | ||| | ||| | Sbjct 35820 GATGCTCGCGATGCTTCGGGCGCCGGCAGAACCTCCACTGGCGTTCCAGG--CCTCCATG 35763 Query 33620 ACCTGACTGCG-TAATACAGCCCGTCTGCCGTCTGGTTTTTCAGGACG-GTTTTTCCAGT 33677 ||||| ||||| | | || | || |||||||| | | || || | ||||| Sbjct 35762 ACCTGGCTGCGTTTAGTCA-CGCGCTCCCCGTCTGG-CTCACTGGCCGAAGCCTGCCAGT 35705 Query 33678 ATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAGAGTGTGACCACAGGATAATGCG 33737 ||||||||||||||||| ||| || |||| || || || || || ||| Sbjct 35704 GCCTGTAGCTGCTGCGATGTACCTTAAAGGTCAGGCACAGGGTCGTAACCGGGTATCGCG 35645 Query 33738 CTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGTCTGACATCAAGAGCGCGGTAGC 33797 | || || | ||| |||| |||| ||| || ||||| ||||| |||||||| ||||| Sbjct 35644 CCCTCAGCCTGTCGACTATCATGAACCGTTGAGTGAGTCCGACATTAAGAGCGCCGTAGC 35585 Query 33798 CTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTAGCTTTTTCCTGAGCTCACGGAT 33857 ||||||||||||||| || |||||||||| |||||||| |||||| | | |||||| | Sbjct 35584 CTTTTTTAATATTTCGTTTTCCATTTCAAGGCGTTGTATTTTTTTCTTCATCTCACGCAG 35525 Query 33858 TTCAATTTGTTCCGGGGTAATGGGGGAG-GCTTTTGGTGTTTTGCCCTGACGCTCATCAC 33916 |||| || || ||||| | | || || | || ||||| || || ||||| | Sbjct 35524 CTCAAGCTGCTCAGGGGTGA-GAGGAAGCCCCGCAGGGGTTTTACCTTGTCGCTCCAGCC 35466 Query 33917 GCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAACATCCATAGCTTTGGCGGCAT 33976 |||| |||||||| | |||| | |||| ||| |||| | |||| |||||| | Sbjct 35465 TGAGTTTATTGACCCAGCGAGTCAGAGCGGAATGGCTGACATTAACCGCTTCGGCGGCCT 35406 Query 33977 CTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGC 34036 | | ||||| ||||| |||||||||| || | |||| | ||||| || || Sbjct 35405 TAACAAATGTGTAGCCGTGGTCGACAACCAGTTTTGCAGCTTCGAGCTTAAATTCAGCCG 35346 Query 34037 TAAAATTTCtttttttCATTGGAGCACCTGTGTTGTTCT-GAGGTGAGCATATCACCTCT 34095 | |||| ||| |||| || ||||||| |||| | ||||||||||||||||||| Sbjct 35345 TGAAAT---GTTTAGCCATTTGATCACCTGTCGTGTTGTGGAGGTGAGCATATCACCTCC 35289 Query 34096 GTTCAGGTGGCCAAATTCAGTGTGCCACTTCAA 34128 | ||||||||||| ||||||||||||| ||| Sbjct 35288 GATCAGGTGGCCAGTATCAGTGTGCCACTACAA 35256 Score = 98.7 bits (108), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 33994 TGGTCAACAACCAGTTGAGCGGATTCGCGTTTAAACTCTGCGCTAAAATTTCtttttttC 34053 ||||| |||||||||| || | |||| | ||||| || || | |||| | || | Sbjct 17482 TGGTCGACAACCAGTTTTGCAGCTTCGAGCTTAAATTCAGCCGTGAAATGT---TTAGCC 17426 Query 34054 ATTGGAGCACCTGTGTTGTTCTG-AGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATT 34112 ||| || ||||||| |||| || |||||||||||||||||| | ||||||||||| | Sbjct 17425 ATTTGATCACCTGTCGTGTTGTGGAGGTGAGCATATCACCTCCGATCAGGTGGCCAGTAT 17366 Query 34113 CAGTGTGCCACTTCA 34127 |||||||||||| || Sbjct 17365 CAGTGTGCCACTACA 17351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124812358259170