Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq13 132 6e-26 seq25 129 7e-25 >seq13 Length=8037603 Score = 132 bits (146), Expect = 6e-26 Identities = 192/270 (71%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 7138 TCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTC 7197 || ||||| ||| | ||||| || || ||||||||| || |||||||| |||||| Sbjct 7580586 TCGATACCTTGATTTCTATAATCTGTGTGCATATTTATATATTTTGCTCCAAAGTGTCTC 7580645 Query 7198 CATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGA 7257 |||||||| ||||| | ||| |||||||| || ||||| |||| | ||| || | Sbjct 7580646 CATTGAAAGCCATACACAGGGCCTAAATCTCCCTCTTCTCGATCGGTGAATTTACATAAA 7580705 Query 7258 TTTAAATTAGATT---TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAA 7314 | || | ||| ||| | || |||||||||||| |||||| ||||| ||||| Sbjct 7580706 TCCAA---AAATTCACGTGAACTATTAGCATCCCAAATGTGTACATCTTTTTCAGATAAT 7580762 Query 7315 TTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAA 7374 | | | |||||| || ||| ||| |||||| | | ||| || || | ||| |||||| Sbjct 7580763 TCTTTTGCATTTGTTGAACCTCTAATGAACCAAAGTAATTCCTCGACCACTCCCCGCCAA 7580822 Query 7375 AACATTCTTTTTGTAGTGAATAAAGGGAAT 7404 || | | ||| || || ||||| || ||| Sbjct 7580823 AATACACGTTTGGTTGTCAATAATGGAAAT 7580852 Score = 102 bits (112), Expect = 1e-16 Identities = 182/257 (71%), Gaps = 18/257 (7%) Strand=Plus/Plus Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957 |||||||| | ||||| ||||| | ||||||||| | ||||| || ||||| | || Sbjct 7579963 TGAGCAATCATGTATGTCAATAAAGAATAAGAAGCAATGTTAAATGGCACACCGAGACCT 7580022 Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAA---AATATTGTCTATAGCATAAAAT 7014 ||||| || |||||| ||| ||||||||| | | || | ||| |||||||| Sbjct 7580023 ATATCGGCGCTTCTTTGGTAAAGTTGACAAGAAAGTTCACCATCGGCTA---CATAAAAT 7580079 Query 7015 TGACACAATAC-ATGACATGGAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCA 7070 ||| |||| | |||||| ||||| || |||| | | || ||| ||||||||| Sbjct 7580080 TGA-ACAAGAATATGACAAGGAGG---AAGAGCCATTTTTGGAATGTCAATTGGATTCCA 7580135 Query 7071 AGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTA--TAATTATT 7128 |||| ||||| || || ||||||| || | || ||| ||||| | | || | || Sbjct 7580136 AGCACACATTATTATTCGCCTATCATCAGG-TGTGCTTTGTATTTTATCAATTACATCTT 7580194 Query 7129 TGTAATTGATCTATACC 7145 | ||||||||| ||||| Sbjct 7580195 T-TAATTGATCAATACC 7580210 Score = 100 bits (110), Expect = 3e-16 Identities = 187/267 (70%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 7141 ATACCCTGACCTTCATAATTAGTATGACAATTT-ATATAATTAGCTCCAAAATGTCTCCA 7199 ||||| || ||| ||||| |||| ||| | || || || || ||| |||||||||| Sbjct 7607644 ATACCTTGGCCTGTATAATCTGTAT-ACATGTCGATGTATTTTGCACCATAATGTCTCCA 7607586 Query 7200 TTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGAT-GATTAAATCCTAATCGAT 7258 |||||| |||||||| || |||||||| ||||| || | || ||| ||| || ||| || Sbjct 7607585 TTGAAAGCCATAAATCGGGCCTAAATCTCCTTCGTCTCTATCGATGAAA-CCCAAT-GAG 7607528 Query 7259 TTAAATTAGATT-TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAATTT 7317 | | | || | ||| ||| ||||||||||| | ||| ||| | |||| | | Sbjct 7607527 TCGAGAAACTTTCTAGATGCATTGGCATCCCAAATTTTGACACCTTTATCGGATAGTTCT 7607468 Query 7318 AAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAAC 7377 | || || || ||| | | ||||| | | ||| || || | | |||||||||| Sbjct 7607467 TTCGCGTTAGTGGAGCCTCTGATAAACCACAGCAATTCCTCAACAACTGCACGCCAAAAT 7607408 Query 7378 ATTCTTTTTGTAGTGAATAAAGGGAAT 7404 | || |||||| |||| ||| || ||| Sbjct 7607407 ACTCGTTTTGTTGTGAGTAATGGAAAT 7607381 >seq25 Length=3995362 Score = 129 bits (142), Expect = 7e-25 Identities = 155/213 (73%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 164715 TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACG------ 164768 |||| | ||||| | || | ||||||||||| |||||| | || ||| | | Sbjct 85096 TAGTGGACTACATATAATCATCTTTGATGAGATTGATGCTATCTGTAAAGCAAGAGGAAG 85037 Query 164769 ------TGGTGATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGA 164822 ||||| || | |||||||| |||| || ||||| || ||| | ||||| || Sbjct 85036 TGTTGCTGGTGCTACAGGTGTTCATGATACAGTAGTGAATCAATTACTTGCAAAAATTGA 84977 Query 164823 TGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAAT 164882 |||||| ||| ||||||||||||||| || | || ||||| ||| ||| ||| | || Sbjct 84976 TGGTGTTGAACAATTAAATAATATTTTAGTTATTGGGATGACTAACAGACGAGATATGAT 84917 Query 164883 TGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 |||||| |||||||||||||||||| |||| || Sbjct 84916 TGATGAGGCTTTATTACGACCTGGTAGATTGGA 84884 Score = 118 bits (130), Expect = 1e-21 Identities = 214/310 (69%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||| | |||||||| | || || ||||| ||||| | || || | Sbjct 85529 ATTGGGATTTCAATAAAATGGGAATTGGAGGTTTAGATAAGGAATTCAGTGCAATATTTA 85470 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 || ||||||||||||| ||| |||| ||| | | | | || | || ||||| | Sbjct 85469 GAAGAGCATTTGCTTCAAGAGTTTTTCCACCAGAAGTTGTTACACAACTTGGATGTAAGC 85410 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || ||||||| |||||||| ||||||| || || ||||||||| | |||||| || Sbjct 85409 ATGTAAAAGGTATTTTATTGTATGGACCACCAGGCACTGGTAAAACACTTATGGCTAGAC 85350 Query 164573 GCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 |||| || | |||||| | || || || ||||||||||| ||| || | | Sbjct 85349 AAATTG-GAAATATGTTAAATGCAAGAGAACC--AAAGATTGTTAATGGACCTCAAATTT 85293 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 || | |||||||| ||||| ||||| || | |||| || ||| || ||||||| Sbjct 85292 TGGATAAATATGTTGGTGAAAGTGAAGCAAACATAAGAAGATTATTTGCTGATGCTGAAG 85233 Query 164690 AAGAACAAAA 164699 ||||| |||| Sbjct 85232 AAGAAGAAAA 85223 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 164921 AAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGTGG 164980 |||| ||||| | | || || || | ||| | | |||||||||||| ||||| Sbjct 84795 AAATGGAAATCAGTCTTCCTGATGAACATGGAAGACATCAAATTTTAAATATTCATACAA 84736 Query 164981 CTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAGCTGCCG 165040 | | |||||| | | | | | || |||| |||||||||||||| || |||| | Sbjct 84735 CAAGGATGAAAGATTATAAAAAAATAGCTCCTGATGTAGATTTAAAAGAACTAGCCACAT 84676 Query 165041 AAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAA 165093 || ||||||| ||||||||||||| |||| || ||||| ||||| |||||| Sbjct 84675 TGACGAAAAATTTTAGTGGTGCTGAACTAGAAGGTTTAGTTAGAGCTGCTCAA 84623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595853699281200