Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013
-12-04] 2,457 sequences; 277,059,195 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq13 132 6e-26
seq25 129 7e-25
>seq13
Length=8037603
Score = 132 bits (146), Expect = 6e-26
Identities = 192/270 (71%), Gaps = 6/270 (2%)
Strand=Plus/Plus
Query 7138 TCTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTC 7197
|| ||||| ||| | ||||| || || ||||||||| || |||||||| ||||||
Sbjct 7580586 TCGATACCTTGATTTCTATAATCTGTGTGCATATTTATATATTTTGCTCCAAAGTGTCTC 7580645
Query 7198 CATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATGATTAAATCCTAATCGA 7257
|||||||| ||||| | ||| |||||||| || ||||| |||| | ||| || |
Sbjct 7580646 CATTGAAAGCCATACACAGGGCCTAAATCTCCCTCTTCTCGATCGGTGAATTTACATAAA 7580705
Query 7258 TTTAAATTAGATT---TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAA 7314
| || | ||| ||| | || |||||||||||| |||||| ||||| |||||
Sbjct 7580706 TCCAA---AAATTCACGTGAACTATTAGCATCCCAAATGTGTACATCTTTTTCAGATAAT 7580762
Query 7315 TTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAA 7374
| | | |||||| || ||| ||| |||||| | | ||| || || | ||| ||||||
Sbjct 7580763 TCTTTTGCATTTGTTGAACCTCTAATGAACCAAAGTAATTCCTCGACCACTCCCCGCCAA 7580822
Query 7375 AACATTCTTTTTGTAGTGAATAAAGGGAAT 7404
|| | | ||| || || ||||| || |||
Sbjct 7580823 AATACACGTTTGGTTGTCAATAATGGAAAT 7580852
Score = 102 bits (112), Expect = 1e-16
Identities = 182/257 (71%), Gaps = 18/257 (7%)
Strand=Plus/Plus
Query 6898 TGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCC 6957
|||||||| | ||||| ||||| | ||||||||| | ||||| || ||||| | ||
Sbjct 7579963 TGAGCAATCATGTATGTCAATAAAGAATAAGAAGCAATGTTAAATGGCACACCGAGACCT 7580022
Query 6958 ATATCTGCTGATCTTTGATAACATTGACAAGATAA---AATATTGTCTATAGCATAAAAT 7014
||||| || |||||| ||| ||||||||| | | || | ||| ||||||||
Sbjct 7580023 ATATCGGCGCTTCTTTGGTAAAGTTGACAAGAAAGTTCACCATCGGCTA---CATAAAAT 7580079
Query 7015 TGACACAATAC-ATGACATGGAGGTAAAACAGCCTGATCT---ATATCAGATGGATTCCA 7070
||| |||| | |||||| ||||| || |||| | | || ||| |||||||||
Sbjct 7580080 TGA-ACAAGAATATGACAAGGAGG---AAGAGCCATTTTTGGAATGTCAATTGGATTCCA 7580135
Query 7071 AGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTA--TAATTATT 7128
|||| ||||| || || ||||||| || | || ||| ||||| | | || | ||
Sbjct 7580136 AGCACACATTATTATTCGCCTATCATCAGG-TGTGCTTTGTATTTTATCAATTACATCTT 7580194
Query 7129 TGTAATTGATCTATACC 7145
| ||||||||| |||||
Sbjct 7580195 T-TAATTGATCAATACC 7580210
Score = 100 bits (110), Expect = 3e-16
Identities = 187/267 (70%), Gaps = 6/267 (2%)
Strand=Plus/Minus
Query 7141 ATACCCTGACCTTCATAATTAGTATGACAATTT-ATATAATTAGCTCCAAAATGTCTCCA 7199
||||| || ||| ||||| |||| ||| | || || || || ||| ||||||||||
Sbjct 7607644 ATACCTTGGCCTGTATAATCTGTAT-ACATGTCGATGTATTTTGCACCATAATGTCTCCA 7607586
Query 7200 TTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGAT-GATTAAATCCTAATCGAT 7258
|||||| |||||||| || |||||||| ||||| || | || ||| ||| || ||| ||
Sbjct 7607585 TTGAAAGCCATAAATCGGGCCTAAATCTCCTTCGTCTCTATCGATGAAA-CCCAAT-GAG 7607528
Query 7259 TTAAATTAGATT-TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAAATTT 7317
| | | || | ||| ||| ||||||||||| | ||| ||| | |||| | |
Sbjct 7607527 TCGAGAAACTTTCTAGATGCATTGGCATCCCAAATTTTGACACCTTTATCGGATAGTTCT 7607468
Query 7318 AAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAAC 7377
| || || || ||| | | ||||| | | ||| || || | | ||||||||||
Sbjct 7607467 TTCGCGTTAGTGGAGCCTCTGATAAACCACAGCAATTCCTCAACAACTGCACGCCAAAAT 7607408
Query 7378 ATTCTTTTTGTAGTGAATAAAGGGAAT 7404
| || |||||| |||| ||| || |||
Sbjct 7607407 ACTCGTTTTGTTGTGAGTAATGGAAAT 7607381
>seq25
Length=3995362
Score = 129 bits (142), Expect = 7e-25
Identities = 155/213 (73%), Gaps = 12/213 (6%)
Strand=Plus/Minus
Query 164715 TAGTAAATTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACG------ 164768
|||| | ||||| | || | ||||||||||| |||||| | || ||| | |
Sbjct 85096 TAGTGGACTACATATAATCATCTTTGATGAGATTGATGCTATCTGTAAAGCAAGAGGAAG 85037
Query 164769 ------TGGTGATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGA 164822
||||| || | |||||||| |||| || ||||| || ||| | ||||| ||
Sbjct 85036 TGTTGCTGGTGCTACAGGTGTTCATGATACAGTAGTGAATCAATTACTTGCAAAAATTGA 84977
Query 164823 TGGTGTAGAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAAT 164882
|||||| ||| ||||||||||||||| || | || ||||| ||| ||| ||| | ||
Sbjct 84976 TGGTGTTGAACAATTAAATAATATTTTAGTTATTGGGATGACTAACAGACGAGATATGAT 84917
Query 164883 TGATGATGCTTTATTACGACCTGGTCGATTAGA 164915
|||||| |||||||||||||||||| |||| ||
Sbjct 84916 TGATGAGGCTTTATTACGACCTGGTAGATTGGA 84884
Score = 118 bits (130), Expect = 1e-21
Identities = 214/310 (69%), Gaps = 6/310 (2%)
Strand=Plus/Minus
Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452
||||| |||| | |||||||| | || || ||||| ||||| | || || |
Sbjct 85529 ATTGGGATTTCAATAAAATGGGAATTGGAGGTTTAGATAAGGAATTCAGTGCAATATTTA 85470
Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512
|| ||||||||||||| ||| |||| ||| | | | | || | || ||||| |
Sbjct 85469 GAAGAGCATTTGCTTCAAGAGTTTTTCCACCAGAAGTTGTTACACAACTTGGATGTAAGC 85410
Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572
|| ||||||| |||||||| ||||||| || || ||||||||| | |||||| ||
Sbjct 85409 ATGTAAAAGGTATTTTATTGTATGGACCACCAGGCACTGGTAAAACACTTATGGCTAGAC 85350
Query 164573 GCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629
|||| || | |||||| | || || || ||||||||||| ||| || | |
Sbjct 85349 AAATTG-GAAATATGTTAAATGCAAGAGAACC--AAAGATTGTTAATGGACCTCAAATTT 85293
Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689
|| | |||||||| ||||| ||||| || | |||| || ||| || |||||||
Sbjct 85292 TGGATAAATATGTTGGTGAAAGTGAAGCAAACATAAGAAGATTATTTGCTGATGCTGAAG 85233
Query 164690 AAGAACAAAA 164699
||||| ||||
Sbjct 85232 AAGAAGAAAA 85223
Score = 91.5 bits (100), Expect = 2e-13
Identities = 124/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 164921 AAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTCATGTGG 164980
|||| ||||| | | || || || | ||| | | |||||||||||| |||||
Sbjct 84795 AAATGGAAATCAGTCTTCCTGATGAACATGGAAGACATCAAATTTTAAATATTCATACAA 84736
Query 164981 CTAAAATGAAATCCTGTGATATATTATCTCCCGATGTAGATTTAAATAAAATAGCTGCCG 165040
| | |||||| | | | | | || |||| |||||||||||||| || |||| |
Sbjct 84735 CAAGGATGAAAGATTATAAAAAAATAGCTCCTGATGTAGATTTAAAAGAACTAGCCACAT 84676
Query 165041 AAACTAAAAATTATAGTGGTGCTGAATTAGAGGGATTAGTAAGAGCCGCTCAA 165093
|| ||||||| ||||||||||||| |||| || ||||| ||||| ||||||
Sbjct 84675 TGACGAAAAATTTTAGTGGTGCTGAACTAGAAGGTTTAGTTAGAGCTGCTCAA 84623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595853699281200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |