Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq3 206 1e-48 seq1 105 4e-18 >seq3 Length=17417032 Score = 206 bits (228), Expect = 1e-48 Identities = 499/746 (67%), Gaps = 21/746 (3%) Strand=Plus/Minus Query 3404 ACGATGTTTTGTGATAAAAATATTGTACATAATATATTGC-ATTTCAAA-TCTATCTTCG 3461 || || ||||||||| ||| | |||| ||| || ||| | |||||| || |||| | Sbjct 17030396 ACAATTTTTTGTGATGAAATTCTTGTTT-TAA-ATGTTGTTAATTCAAAGTCAGTCTTTG 17030339 Query 3462 ACAATATCGATaaaaaaaaaTTATGTGACGCCAGGGCAAGATCCAACCCATTCGAA---- 3517 | | ||||||| || | |||| || || ||||||| || || || ||| Sbjct 17030338 CGAGGCTTGATAAAACCGAAATGCGTGAAGCAAGAACAAGATCAAATCCTTTTGAAACGA 17030279 Query 3518 TTAGTGGGCAAAGCtttttttATCAACAGAGGTGCTGTAAAAATGGCAAACATTGATCAT 3577 || | || || ||||| |||| |||| ||||| |||||||| || || || | Sbjct 17030278 TTCGAGGATCAA----TTTTTCTCAATAGAGCCGCTGTCAAAATGGCTAATATAGACAAA 17030223 Query 3578 GCAACGAATTTCGTATTTACA---CGATTGAATGATGGATCAAATGAATTGATATATTTT 3634 || ||||| | || || | | || | | ||||| || || | |||||| Sbjct 17030222 GCTTGTAATTTTATGTTCACCGAGCCACCTAACGTTAAGTCAAACGAGTTACTCTATTTT 17030163 Query 3635 GCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAGAAATGG 3694 || || || || || || ||||| || || || || ||| | || ||||||||||||||| Sbjct 17030162 GCAGATGTTTGTGCAGGGCCAGGAGGATTTAGCGAGTATGTTTTGTGGAGAAAGAAATGG 17030103 Query 3695 AATATCAAAGGTTATGGTATGACG-TTACGCGaaa--aaaaTGATTTTCAACTGAACAGA 3751 | ||||| | |||| | || ||| ||| ||||||||||| | || | Sbjct 17030102 CACGCTAAAGGCTTTGGTTTCACACTTAA---AAATGAAAATGATTTTAAGCTTCATGAT 17030046 Query 3752 TTTTACGATAACTTTTCGGAAACTTTACACCCGTATTATGGTCCGCTTAACGATGGTAAT 3811 ||||||| | | || || ||||| || || |||||||| || || ||||||||| Sbjct 17030045 TTTTACGCTGGCCCTTGTGAGACTTTCCATCCTTATTATGGCCCTAAAAATGATGGTAAT 17029986 Query 3812 ATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATGATTATGAAAGATACCGAAGGA 3871 | | || || ||||||| | || ||| || | || ||| | | || ||| Sbjct 17029985 GTATTTGATCCAGAAAATCAAATAGCTTTGAAGGACTTAATAATGTCACAAACAGAAAAT 17029926 Query 3872 AAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATG 3931 | || || |||||||||||| | || || || || || || | || ||||||||| || Sbjct 17029925 ATGGGAGTTCATTTTATGATGTCCGATGGAGGTTTTTCAGTAAAAGGACAAGAAAATCTG 17029866 Query 3932 CAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATA 3991 |||||||| | || || | | ||| | || ||||| ||| | || |||||||| | Sbjct 17029865 CAAGAAATACTTTCAAAGCAATTATATCTTTGCCAATGCTTAGTAGCGTTGATGATTGTC 17029806 Query 3992 CGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGT 4051 | || |||||| | ||||| || | || ||| ||||||| || || |||| ||| Sbjct 17029805 AGGGTTAATGGTCACTTTGTTACAAAGGTATTTGATTTATTTACTCCATTCAGTGTTGGA 17029746 Query 4052 TTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATTTTCAAACCACATTCATCG 4111 | || || | |||||| | | ||| || | ||| ||||||| |||||| || | || Sbjct 17029745 CTTGTTTACATAATGTATCGCTGTTTCAAAAGAATTAGTATTTTTAAACCAAATACCTCT 17029686 Query 4112 CGACCGGCCAATTCTGAAAGATATTT 4137 |||| || ||||||||| |||| || Sbjct 17029685 AGACCAGCTAATTCTGAACGATACTT 17029660 >seq1 Length=27400720 Score = 105 bits (116), Expect = 4e-18 Identities = 129/175 (74%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 5897 AATCATGGGGTGGTTTGCCAGAAAACCAGATATGTGCGGCTGCTCCAGGAGGTGGTAAAG 5956 |||||||||| ||| | || || || || ||||| ||| ||| | |||||||||| Sbjct 18377309 AATCATGGGGAGGTCTTCCTGAGGGACAAATTTGTGCTGCTTATCCTGCCGGTGGTAAAG 18377368 Query 5957 ACGCATGCCAAGGTGATTCGGGTGGCCCGTTAGTTGTCGATAAC---CGCTTAGCTGGTA 6013 | || |||||||||||||| || || || | ||| |||| || |||||||| | Sbjct 18377369 ATGCTTGCCAAGGTGATTCTGGCGGACC---CCTCGTCATTAACGGACGTTTAGCTGGAA 18377425 Query 6014 TCGTGTCATGGGGTAATGGATGTGGTCGTACAGGATGGCCCGGAGCTTACACTGA 6068 |||| |||||||| |||||||||| | | | ||| | || |||| |||||| || Sbjct 18377426 TCGTTTCATGGGGCAATGGATGTGCTAGGAAAGGTTATCCAGGAGTTTACACCGA 18377480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276545318688871