Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1 109 3e-19 seq22 89.7 3e-13 >seq1 Length=27400720 Score = 109 bits (120), Expect = 3e-19 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 3711 GCCACTTCGGTGTAAACGCCCGGCCAACCATTTCTACCACACCCATTCCCCCACGACACG 3770 || || ||||||||||| || || |||| || ||| |||| ||||| ||||| || ||| Sbjct 18377486 GCAACCTCGGTGTAAACTCCTGGATAACCTTTCCTAGCACATCCATTGCCCCATGAAACG 18377427 Query 3771 ATTCCAGCCAACCTATCGTTAACAACCATTGGTCCACCCGAATCCCCTTGACACGCGTCT 3830 |||||||| || | |||||| || | ||||| || ||||| ||||| || || ||| Sbjct 18377426 ATTCCAGCTAAACGTCCGTTAATGACGAGGGGTCCGCCAGAATCACCTTGGCAAGCATCT 18377367 Query 3831 TTACCACCTCCTGGTGACGCCGCACATATTTGATTTTCTGGCAAACCGCCCCA 3883 |||||||| | || | || ||||| ||||| || || | ||| ||||| Sbjct 18377366 TTACCACCGGCAGGATAAGCAGCACAAATTTGTCCCTCAGGAAGACCTCCCCA 18377314 >seq22 Length=4749808 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| ||| |||| | | |||||||||| ||||||||||||||||||| | Sbjct 4383952 AATAAAAAA--AAAATGGCTCCAGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCGC 4384009 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||| | |||| Sbjct 4384010 GACGCTCTAACCAACTGAGCTATGGAGCCG 4384039 Lambda K H 0.635 0.409 0.915 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261483369727732