Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2 96.9 3e-15 >seq2 Length=17806784 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAG-TGCAAAGTAGATTCCTTTTGCA 94826 |||| ||| || ||| || | | || || | |||| ||||| || ||||||||||| | Sbjct 3492080 AAAAATTTGCATTCCACCACGAAGGCG-AAGAACAAGATGCAATGTTGATTCCTTTTGAA 3492022 Query 94827 CGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCT 94884 || ||||| | | |||||| | ||| || | ||||| || ||||||||| | Sbjct 3492021 TATTGTAATC--TGAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACG 3491964 Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 |||||||||||| ||||| |||||||| || | ||||| || || || | | || Sbjct 3491963 TTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGT 3491904 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 ||| | || || |||| || || ||||| ||||| | ||||| || || ||||| Sbjct 3491903 GTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTG 3491844 Query 95005 CAT 95007 ||| Sbjct 3491843 CAT 3491841 Score = 96.9 bits (106), Expect = 3e-15 Identities = 170/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAG-TGCAAAGTAGATTCCTTTTGCA 94826 |||| ||| || ||| || | | || || | |||| ||||| || ||||||||||| | Sbjct 3493195 AAAAATTTGCATTCCACCACGAAGGCG-AAGAACAAGATGCAATGTTGATTCCTTTTGAA 3493137 Query 94827 CGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCT 94884 || ||||| | | |||||| | ||| || | ||||| || ||||||||| | Sbjct 3493136 TATTGTAATC--TGAAAGTGTTCTACCATCTTCTAATTGTTTACCAGCAAAGATTAGACG 3493079 Query 94885 TTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGT 94944 |||||||||||| ||||| |||||||| || | ||||| || || || | | || Sbjct 3493078 TTGCTGATCTGGGGGAATTCCTTCTTTATCCTGGATTTTGGCTTTAACATTCTCAATGGT 3493019 Query 94945 GTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTG 95004 ||| | || || |||| || || ||||| ||||| | ||||| || || ||||| Sbjct 3493018 GTCTGATGCCTCTACCTCAAGAGTAATAGTTTTACCAGTCAAGGTTTTAACGAAAATCTG 3492959 Query 95005 CAT 95007 ||| Sbjct 3492958 CAT 3492956 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||||| || || ||||| || | ||| || ||||| || | Sbjct 12208991 AAAATTTGCATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATA 12209050 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| |||||||| || || || | || || | | ||| Sbjct 12209051 TTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGC 12209110 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || ||||| ||||||||||| | || || |||||||| | | ||||| Sbjct 12209111 TGGTCAGGGGGAATGCCTTCTTTGTCCTGGATCTTAGCCTTGACATTTTCTATTGTGTCT 12209170 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| |||| || || || || ||||| | || || ||||||||||||||| Sbjct 12209171 GAAGCTTCGACTTCAAGAGTAATTGTCTTCCCAGTCAATGTCTTTACAAAGATCTGCATG 12209230 Query 95009 CTT 95011 || Sbjct 12209231 ATT 12209233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||||| ||||| ||||| || | ||| || ||||| || | Sbjct 12207167 AAAATTTGCATGCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATA 12207226 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| |||||||| || || || | || || | | ||| Sbjct 12207227 TTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGC 12207286 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || ||||| ||||||||||| | ||| || |||||||| | | ||||| Sbjct 12207287 TGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCC 12207346 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| |||| || || ||||| || || | || || || || || |||||| Sbjct 12207347 GAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207406 Query 95009 C 95009 | Sbjct 12207407 C 12207407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||||| ||||| ||||| || | ||| || ||||| || | Sbjct 12207623 AAAATTTGCATGCCTCCTCTCAGTCGCAGAACCAAATGAAGAGTTGACTCCTTCTGGATA 12207682 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| |||||||| || || || | || || | | ||| Sbjct 12207683 TTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGC 12207742 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || ||||| ||||||||||| | ||| || |||||||| | | ||||| Sbjct 12207743 TGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCC 12207802 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| |||| || || ||||| || || | || || || || || |||||| Sbjct 12207803 GAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207862 Query 95009 C 95009 | Sbjct 12207863 C 12207863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||| ||||| ||| |||| || | | ||| |||||||| ||||| |||||||| Sbjct 3492224 ATCTTCCAATTGTTTACCGGCAAAAATGAGACGTTGTTGATCTGGTGGAATTCCTTCTTT 3492165 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || || || || | | ||| |||| || || || | |||||| Sbjct 3492164 GTCTTGGATCTTCGCTTTAACATTTTCAATAGTATCAGAAGCTTCAACTTCCAACGTGAT 3492105 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| ||||| | ||||| ||||| || ||||| Sbjct 3492104 GGTTTTGCCAGTTAAGGTTTTAACAAAAATTTGCAT 3492069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||||| || || ||||| || | ||| || ||||| || | Sbjct 12207395 AAAATTTGCATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATA 12207454 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| |||||||| || || || | || || | | ||| Sbjct 12207455 TTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGC 12207514 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || ||||| ||||||||||| | ||| || |||||||| | | ||||| Sbjct 12207515 TGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCC 12207574 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| |||| || || ||||| || || | || || || || || |||||| Sbjct 12207575 GAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12207634 Query 95009 C 95009 | Sbjct 12207635 C 12207635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||||| || || ||||| || | ||| || ||||| || | Sbjct 12207851 AAAATTTGCATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATA 12207910 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| |||||||| || || || | || || | | ||| Sbjct 12207911 TTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGC 12207970 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || ||||| ||||||||||| | ||| || |||||||| | | ||||| Sbjct 12207971 TGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCC 12208030 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| |||| || || ||||| || || | || || || || || |||||| Sbjct 12208031 GAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208090 Query 95009 C 95009 | Sbjct 12208091 C 12208091 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||||| || || ||||| || | ||| || ||||| || | Sbjct 12208079 AAAATTTGCATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATA 12208138 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| |||||||| || || || | || || | | ||| Sbjct 12208139 TTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGC 12208198 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || ||||| ||||||||||| | ||| || |||||||| | | ||||| Sbjct 12208199 TGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCC 12208258 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| |||| || || ||||| || || | || || || || || |||||| Sbjct 12208259 GAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208318 Query 95009 C 95009 | Sbjct 12208319 C 12208319 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||||| || || ||||| || | ||| || ||||| || | Sbjct 12208307 AAAATTTGCATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATA 12208366 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| |||||||| || || || | || || | | ||| Sbjct 12208367 TTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGC 12208426 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || ||||| ||||||||||| | ||| || |||||||| | | ||||| Sbjct 12208427 TGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCC 12208486 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| |||| || || ||||| || || | || || || || || |||||| Sbjct 12208487 GAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208546 Query 95009 C 95009 | Sbjct 12208547 C 12208547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||||| || || ||||| || | ||| || ||||| || | Sbjct 12208535 AAAATTTGCATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATA 12208594 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| |||||||| || || || | || || | | ||| Sbjct 12208595 TTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGC 12208654 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || ||||| ||||||||||| | ||| || |||||||| | | ||||| Sbjct 12208655 TGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCC 12208714 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| |||| || || ||||| || || | || || || || || |||||| Sbjct 12208715 GAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12208774 Query 95009 C 95009 | Sbjct 12208775 C 12208775 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || |||||||||| || || ||||| || | ||| || ||||| || | Sbjct 12208763 AAAATTTGCATGCCTCCTCTCAGTCTCAGAACCAAATGAAGAGTTGACTCCTTCTGGATA 12208822 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| |||||||| || || || | || || | | ||| Sbjct 12208823 TTGTAGTCGGACAGAGTACGTCCATCCTCCAATTGCTTACCAGCGAAAATCAGACGCTGC 12208882 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || || ||||| ||||||||||| | ||| || |||||||| | | ||||| Sbjct 12208883 TGGTCAGGGGGAATGCCTTCTTTGTCCTGAATCTTAGCCTTGACATTTTCTATTGTGTCC 12208942 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| |||| || || ||||| || || | || || || || || |||||| Sbjct 12208943 GAAGCTTCGACTTCAAGAGTAATTGTTTTGCCTGTTAATGTCTTAACGAAAATTTGCATG 12209002 Query 95009 C 95009 | Sbjct 12209003 C 12209003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448277431856520