Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq27 156 7e-34 seq10 156 7e-34 seq8 147 3e-31 >seq27 Length=2371257 Score = 156 bits (172), Expect = 7e-34 Identities = 198/270 (73%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||| || ||||||| | | || ||||| |||||||| || ||||| ||||| || || Sbjct 2352805 GCTAAACGGCATCGCA-AGGTATTGCGAGACAACATCCAGGGTATCACGAAGCCCGCCAT 2352863 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| ||||| ||||| ||||| || ||| |||| || | |||| || |||| Sbjct 2352864 TCGCCGTCTCGCTCGACGTGGAGGAGTGAAACGTATCTCCGGTCTCATCTACGAGGAGAC 2352923 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| || | ||| || || ||| ||||| Sbjct 2352924 GCGTGGTGTGCTCAAGGTCTTCCTTGAGAACGTCATTCGTGACGCCGTCACCTACACCGA 2352983 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| ||||||| || | || | ||||| Sbjct 2352984 ACACGCCAAGAGGAAGACGGTCACTGCCATGGACGTCGTCTACGCCCTCAAGAGACAAGG 2353043 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 || | | ||||||||||| ||||||| Sbjct 2353044 ACGCACACTCTATGGTTTTGGCGGTTAATC 2353073 Score = 156 bits (172), Expect = 7e-34 Identities = 198/270 (73%), Gaps = 2/270 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||| || ||||||| | | || ||||| |||||||| || ||||| ||||| || || Sbjct 2364607 GCTAAACGGCATCGCA-AGGTATTGCGAGACAACATCCAGGGTATCACGAAGCCCGCCAT 2364549 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| ||||| ||||| ||||| || ||| |||| || | |||| || |||| Sbjct 2364548 TCGCCGTCTCGCTCGACGTGGAGGAGTGAAACGTATCTCCGGTCTCATCTACGAGGAGAC 2364489 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| || | ||| || || ||| ||||| Sbjct 2364488 GCGTGGTGTGCTCAAGGTCTTCCTTGAGAACGTCATTCGTGACGCCGTCACCTACACCGA 2364429 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| ||||||| || | || | ||||| Sbjct 2364428 ACACGCCAAGAGGAAGACGGTCACTGCCATGGACGTCGTCTACGCTCTCAAGAGACAAGG 2364369 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 || | | ||||||||||| ||||||| Sbjct 2364368 ACGCACTCTCTATGGTTTTGGCGGTTAATC 2364339 >seq10 Length=9558897 Score = 156 bits (172), Expect = 7e-34 Identities = 198/270 (73%), Gaps = 2/270 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||| || ||||||| | | || ||||| |||||||| || ||||| ||||| || || Sbjct 2205478 GCTAAACGGCATCGCA-AGGTATTGCGAGACAACATCCAGGGTATCACGAAGCCCGCCAT 2205536 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| ||||| ||||| ||||| || ||| |||| || | |||| || |||| Sbjct 2205537 TCGCCGTCTCGCTCGACGTGGAGGAGTGAAACGTATCTCCGGTCTCATCTACGAGGAGAC 2205596 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| || | ||| || || ||| ||||| Sbjct 2205597 GCGTGGTGTGCTCAAGGTCTTCCTTGAGAACGTCATTCGTGACGCCGTCACCTACACCGA 2205656 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| ||||| ||||||| ||||||| || | || | ||||| Sbjct 2205657 ACACGCCAAGAGGAAGACGGTCACTGCCATGGACGTCGTCTACGCTCTCAAGAGACAAGG 2205716 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATC 16701 || | | ||||||||||| ||||||| Sbjct 2205717 ACGCACTCTCTATGGTTTTGGCGGTTAATC 2205746 >seq8 Length=10932247 Score = 147 bits (162), Expect = 3e-31 Identities = 195/268 (73%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||| || ||||||| | | || ||||| |||||||| || ||||| ||||| || || Sbjct 578092 GCTAAACGGCATCGCA-AGGTATTGCGAGACAACATCCAGGGTATCACGAAGCCCGCCAT 578150 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| ||||| ||||| ||||| || ||| |||| || | |||| || |||| Sbjct 578151 TCGCCGTCTCGCTCGACGTGGAGGAGTGAAACGTATCTCCGGTCTCATCTACGAGGAGAC 578210 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||| ||||||| ||| ||| || | ||| || || ||| ||||| Sbjct 578211 GCGTGGTGTGCTCAAGGTCTTCCTTGAGAACGTCATTCGTGACGCCGTCACCTACACCGA 578270 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | || || ||||| ||||||| ||||||| || | || | ||||| Sbjct 578271 ACACGCCAAGAGGAAAACGGTCACTGCCATGGACGTCGTCTACGCCCTCAAGAGACAAGG 578330 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||||||||| ||||| Sbjct 578331 ACGCACACTCTATGGTTTTGGCGGTTAA 578358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072953547701