Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratosolen_20solmsi_20marchali_20[refseq_20GCF_5F000503995.1_202013 -12-04] 2,457 sequences; 277,059,195 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8 143 3e-29 seq3 98.7 1e-15 >seq8 Length=10932247 Score = 143 bits (158), Expect = 3e-29 Identities = 221/313 (71%), Gaps = 2/313 (1%) Strand=Plus/Minus Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 || |||||||| || || ||||| || || | | ||||||| ||||||||||||||| Sbjct 3798658 TTACCTGTATTTTTCTTTAGATCAAGAAATTCAAATATATCAGCATGCCACGGTTCCAAA 3798599 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401 || ||||| | | ||||| | || ||||| || ||||| | |||| || || ||| Sbjct 3798598 TACATGGCAAATGCCCCAGGTCTCTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 3798539 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGA-TATA 63460 ||||||||||| | ||| |||| | || || ||||| ||||| || || | || | || Sbjct 3798538 TTATAAACTCTTATCATAGGAACTAAGCCATTCGATATTCCATTTGTGCCAGCGATTCTA 3798479 Query 63461 GCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63520 | | || | || | |||| || || | ||| || || ||||| |||| | Sbjct 3798478 G-TACCTTTTGCTCTAATAGTATGAACACTCAAACCAATGCCACCTGCAGATTTACTAAC 3798420 Query 63521 TAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAG 63580 |||||| |||| |||||| || ||||| || || || |||||||| || |||| | || Sbjct 3798419 TAATGCACATCTTTTTAATGTATCATAAATTCCTTCAATGCTATCTTCAGTCATTGTTAG 3798360 Query 63581 TAGAAAACAGCTA 63593 || || || ||| Sbjct 3798359 AAGGAAGCAACTA 3798347 Score = 136 bits (150), Expect = 5e-27 Identities = 237/344 (69%), Gaps = 8/344 (2%) Strand=Plus/Minus Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796 |||| || || | |||||| || || | ||||||||| ||| ||||||||||||| Sbjct 3799590 TACCAATTGGACGATGTCTGAAGTTCGATCTCTCAGCTTCTTTAATTGGATAATAATTAA 3799531 Query 62797 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62856 ||| ||||| |||| | |||| | || |||||| || || |||| ||| ||| Sbjct 3799530 GATCAATAATCTTATCTAAATTTTGGGTAACAACTTTGGTAACTTCTTTCAATTTTTGAA 3799471 Query 62857 AATCAAATCGCCCATCTATT-------ACAAACATGTTCAAGGCAACAGATGCCAGATTA 62909 | ||| | || | |||| |||||||| || | || | |||||| | |||| Sbjct 3799470 AGTCATA-CGTTTTTTTATTGACATTAACAAACATATTAACAGCGATAGATGCTAAATTA 3799412 Query 62910 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 62969 || || || || |||| | | | |||||| | | || || || |||||||||| Sbjct 3799411 CACACCGCCACTTCATCTGGAGAAGAATATTGCACAACTTCGGTACATAGATTACTACTT 3799352 Query 62970 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63029 |||| || || | ||| | |||||| ||| ||||||| ||| |||||||| ||| Sbjct 3799351 CTGATGGTACCAAGATTCTTTTGATTTGACTTCCTGTTACAATGATCTTTATAAAGCATG 3799292 Query 63030 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63073 | |||||||||||||||| || || | || ||| || |||| Sbjct 3799291 TAAGGAGTACCAGTTTCAACTTGCGACTTTAAAATTGCAGTCCA 3799248 Score = 127 bits (140), Expect = 3e-24 Identities = 192/273 (70%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||||| ||| ||| | || ||||| ||| || || || |||| ||| | ||||| Sbjct 3800475 CTGAACGGAACCATTGTTAGCGATAATTTCATTTTTCATTTCTTCATCCCAAATATTTCT 3800416 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||||| ||| || | | | ||| |||||||| || ||||||||||| || | || | Sbjct 3800415 TTCGGTCAAATCTTTTAATAAATGAGGATTAACAACCTGAAATTCTCCCGAAAGAACGCG 3800356 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 | || || |||||||| || || ||||| | || |||||||| || | |||||||| Sbjct 3800355 TCTTGTATAGATATTACTCGTGTAAGGTTCGATAGATTCATTATTCCCAAGTATTTGAGC 3800296 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || || ||||| || || | ||||| || | | ||| | | || || Sbjct 3800295 TGTAGAAGCTGTTGGCATTGGAGCAAGTAATAATGAGTTACGGATACCATCTTTTGCTAT 3800236 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62515 ||||||||||| || ||||||||||||||| Sbjct 3800235 TTTATCTTTTAAAGCACTCCAATTCCAAAGATC 3800203 Score = 89.7 bits (98), Expect = 6e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 63714 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63773 || || || | ||| | ||| |||||||| |||||||| | || || ||||| || Sbjct 3798079 ACCGCAACTCTCATAAGCATATGCTGAGGCCTTTCAACTACTTTTCCATTAATTTTTAAT 3798020 Query 63774 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 63833 ||||| | ||||||| |||||||| |||||||| || || ||| |||| |||||| Sbjct 3798019 AAGTAACTTCTTTCCAATGTTTTAAATCCAAAATAATTATAACCAAAATCTCTATCGTAA 3797960 Query 63834 ATAATAACCGAGTTGAGTTTATCCTTATATTT 63865 ||||| | || || | |||||| || | ||| Sbjct 3797959 ATAATGGCAGAATTAATTTTATCTTTGTGTTT 3797928 >seq3 Length=17417032 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 33339 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33398 ||| ||||| || || || ||||| |||||||| || | |||||| ||||| ||||| Sbjct 7878531 AATCAGTTCATTACTGAATGTCAGTCCAGGCATTAGTCCTCTCTTTTTCAGCCAGAATAT 7878472 Query 33399 GGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33458 || |||||| ||| ||||||||||| || || |||||||||||||| | | ||| Sbjct 7878471 GGCAGCGAAACTGCCACTGAAGAAGATTCCCTCGACCGCAGCAAAGGCAATTACGCGCTC 7878412 Query 33459 TCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTAC 33515 || | || || || || ||||| || |||||||| || || || ||| Sbjct 7878411 GGCAAACGTAGCACTCTCGTGGTTAATCCAGTTCAAAGCCCAATTAGCTTTTTTAGCTAC 7878352 Query 33516 ACAAGGCATCGTTTCTATGGCATTAAAGAG 33545 || |||| ||||| ||||| || || || Sbjct 7878351 GCAGGGCAGTGTTTCGATGGCGTTGAATAG 7878322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622928067734120